Factsheet for Os01t0911200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 18260611
nucleus: 19621931
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88089	Sorghum	plasma membrane	86.25	86.87
TraesCS3A01G417000.2	Wheat	golgi	84.67	85.9
Zm00001d012086_P004	Maize	plasma membrane	84.81	85.67
TraesCS3D01G412500.1	Wheat	golgi	84.38	85.61
HORVU3Hr1G092660.1	Barley	plasma membrane	84.96	78.54
Zm00001d042398_P001	Maize	mitochondrion, plasma membrane	78.65	72.81
GSMUA_Achr4P29530_001	Banana	plasma membrane	66.33	66.14
KRH67412	Soybean	plasma membrane	60.46	61.43
KRG95690	Soybean	endoplasmic reticulum	59.89	60.76
KRH32199	Soybean	endoplasmic reticulum	58.31	59.07
Solyc07g014700.2.1	Tomato	nucleus	54.01	58.0
AT4G21150.1	Thale cress	plasma membrane	57.31	57.89
CDX82806	Canola	plasma membrane	56.3	57.46
GSMUA_Achr10P...	Banana	plasma membrane	60.89	57.35
CDX79039	Canola	plasma membrane	56.16	57.23
CDY58482	Canola	plasma membrane	56.73	56.73
CDX94025	Canola	plasma membrane	56.3	56.06
VIT_07s0005g03640.t01	Wine grape	plasma membrane	59.74	55.16
Solyc05g046330.2.1	Tomato	endoplasmic reticulum, nucleus	57.59	53.89
Bra013507.1-P	Field mustard	plasma membrane	53.58	53.74
CDY65340	Canola	plasma membrane	53.44	52.46
Bra038784.1-P	Field mustard	plasma membrane	56.88	52.24

Protein Annotations

MapMan:18.1.1.5.6	EntrezGene:4324876	EMBL:AK101333	ProteinID:BAD82429.1	ProteinID:BAF07073.1	ProteinID:BAS75839.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004579	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783
GO:GO:0005789	GO:GO:0005794	GO:GO:0005886	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486
GO:GO:0006487	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008250	GO:GO:0009058
GO:GO:0009409	GO:GO:0009505	GO:GO:0009506	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0019538	GO:GO:0030312	EnsemblPlantsGene:Os01g0911200
EnsemblPlants:Os01t0911200-01	PFAM:PF05817	PANTHER:PTHR12640	UniProt:Q5N7W3	SignalP:SignalP-noTM	InterPro:Swp1
TMHMM:TMhelix	UniParc:UPI000049EA47	RefSeq:XP_015613641.1	SEG:seg	:	:

Description

RPN2Ribophorin II family protein. (Os01t0911200-01)

Coordinates

chr1:+:39696056..39703152

Molecular Weight (calculated)

75210.6 Da

IEP (calculated)

6.576

GRAVY (calculated)

0.179

Length

698 amino acids

Sequence
(BLAST)

001: MAAAGGLPAS ATLLLLVIAA VAVAPLASAV RPVSDAHRSA AAELFAASPD GSFGDLETTY EAVRTFQILG VEKDKGLIGK ACKFAAEKLA SSSSSPAKDL
101: FHAARISGVL KCSVDSGVYD DVATRLKAVI KDTNSLLELY YSVGGLLSIK EQGHNVVLPD ADNTFHAIKA LSQSDGRWRY DTNSAESSTF AAGIALEALS
201: AVISLADSEV DSSMIAVVKN DIVKLFDTIK SYDDGTFYFD EKHVDAAEYK GPITTSASVV RGVTSFAAVA SGKLNIPGEK ILGLAKFFLG IGLPGSAKDC
301: FNQIESLSFL ENNRVFVPLV LSLPSKVFSL TSKDQLKVEV TTVFGSAAPP LRVNLVQVLG SDSKVITTET KELQFDLDNN VHYLDIAPLK IDVGKYSLVF
401: EISLQEQEHE TIYATGGTNT EAIFVTGLIK VDKAEIGISD NDAGTVESVQ KIDLQKDTSV SLSANHLQKL RLSFQLSTPL GKTFKPHQVF LKLKHDESKV
501: EHLFVVPGSA RQFKIVLDFL GLVEKFYYLS GRYDLELAVG DAAMENSFLR ALGHIELDLP EAPEKAPKPP AQAVDPFSKF GPKKEISHIF RSPEKRPPKE
601: LSFAFTGLTL LPIVGFLIGL MRLGVNLKNF PSLPAPAAFA SLFHAGIGAV LLLYVLFWIK LDLFTTLKYL SFLGVFLVFV GHRALSYLSS TSAKQKTA

Best Arabidopsis Sequence Match ( AT4G21150.3 )
(BLAST)

001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

Arabidopsis Description

RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.