CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67412	Soybean	plasma membrane	78.37	78.6
KRG95690	Soybean	endoplasmic reticulum	78.37	78.49
Solyc07g014700.2.1	Tomato	nucleus	62.12	65.85
CDX79039	Canola	plasma membrane	63.43	63.8
CDX82806	Canola	plasma membrane	63.28	63.74
AT4G21150.1	Thale cress	plasma membrane	63.72	63.53
CDX94025	Canola	plasma membrane	64.01	62.91
VIT_07s0005g03640.t01	Wine grape	plasma membrane	68.94	62.83
CDY58482	Canola	plasma membrane	63.28	62.46
Solyc05g046330.2.1	Tomato	endoplasmic reticulum, nucleus	65.02	60.05
Bra013507.1-P	Field mustard	plasma membrane	60.09	59.48
TraesCS3D01G412500.1	Wheat	golgi	58.64	58.72
GSMUA_Achr4P29530_001	Banana	plasma membrane	59.65	58.71
TraesCS3A01G417000.2	Wheat	golgi	58.35	58.43
Os01t0911200-01	Rice	plasma membrane	59.07	58.31
OQU88089	Sorghum	plasma membrane	58.64	58.3
Zm00001d012086_P004	Maize	plasma membrane	58.35	58.18
Bra038784.1-P	Field mustard	plasma membrane	63.43	57.5
CDY65340	Canola	plasma membrane	58.35	56.54
HORVU3Hr1G092660.1	Barley	plasma membrane	58.49	53.38
GSMUA_Achr10P...	Banana	plasma membrane	56.46	52.5
Zm00001d042398_P001	Maize	mitochondrion, plasma membrane	55.15	50.4

Protein Annotations

EntrezGene:100814831	MapMan:18.1.1.5.6	EMBL:ACUP02006104	EnsemblPlantsGene:GLYMA_10G038000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004579	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005975	GO:GO:0006464	GO:GO:0006487	GO:GO:0008150	GO:GO:0008152	GO:GO:0008250
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538
UniProt:I1L8E9	EnsemblPlants:KRH32199	ProteinID:KRH32199	ProteinID:KRH32199.1	PFAM:PF05817	PANTHER:PTHR12640
SignalP:SignalP-TM	InterPro:Swp1	TMHMM:TMhelix	UniParc:UPI000233CF7B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:3378472..3385913

Molecular Weight (calculated)

75119.9 Da

IEP (calculated)

6.899

GRAVY (calculated)

0.209

Length

689 amino acids

Sequence
(BLAST)

001: MATHVSHVIV AAAFLLLLLP FSFSFSISHS HRSAAINLFA ATPTSLEDAY EALRVFQILG IEEKNTPVNE DTCQKVVESL ASSSPLKDLF YALKVNAILK
101: CNVNGNVFKD IASRLKATVH DASALLDIYY SIGGLVVIKD QDSNVDVLLA DVDGVFQSIK VLSQSDGRWR YSSDNPESST YAAGLALESL AGLISLASSE
201: FDQSKVNVVK NGIVKLFDGI EKYEDGTFYF DEKYVGGHEQ RGSLSTTSSV VRGVTAFAAV TSGKINLPGD KILGLAKFFL GIGIPGDAKD FFNQVESLAF
301: LESNRISIPL ILSLPETAYS LTKKGQLKVK VNTVLGSAAP PLTVKLVRAF STGAKDSAII DSKELRYDQE SGFHVLDALP KNVDVGTYVF VFEIVLHDFG
401: SEKVYATGGQ IHVPIYVTGI IEVGNAEITV LDSDLGSAET QKKLDLAGND AVSLSANHLQ KLRFSFQLTT PHGHVFKPHQ AFFKLRHETK VEHIFVVGNT
501: GKKFEKVLDF LGLVEKLFYL SGKYEIELTV GDAVMENSFL RLLGHVELDL PEAPEKAPRP PPPPVDPYSR YGPKAEITHI FRSPEKRPHQ ELSLAFLGLI
601: LLPFIGFLVG LLRLGVNLKN FPGSTVPATF GILFHVGIAA VLLLYVLFWL KLDLFTTLKA FGLLGAILMF VGHRILSHLA FTSAKLKSA

Best Arabidopsis Sequence Match ( AT4G21150.3 )
(BLAST)

001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

Arabidopsis Description

RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.