Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82806 | Canola | plasma membrane | 89.58 | 90.5 |
| CDX79039 | Canola | plasma membrane | 89.58 | 90.36 |
| CDY58482 | Canola | plasma membrane | 88.13 | 87.25 |
| CDX94025 | Canola | plasma membrane | 87.99 | 86.73 |
| Bra013507.1-P | Field mustard | plasma membrane | 85.38 | 84.77 |
| Bra038784.1-P | Field mustard | plasma membrane | 88.57 | 80.53 |
| CDY65340 | Canola | plasma membrane | 82.78 | 80.45 |
| KRH67412 | Soybean | plasma membrane | 63.68 | 64.05 |
| KRH32199 | Soybean | endoplasmic reticulum | 63.53 | 63.72 |
| KRG95690 | Soybean | endoplasmic reticulum | 62.95 | 63.23 |
| Solyc07g014700.2.1 | Tomato | nucleus | 57.89 | 61.54 |
| VIT_07s0005g03640.t01 | Wine grape | plasma membrane | 64.25 | 58.73 |
| Zm00001d012086_P004 | Maize | plasma membrane | 58.32 | 58.32 |
| OQU88089 | Sorghum | plasma membrane | 57.6 | 57.43 |
| Os01t0911200-01 | Rice | plasma membrane | 57.89 | 57.31 |
| GSMUA_Achr4P29530_001 | Banana | plasma membrane | 57.89 | 57.14 |
| TraesCS3D01G412500.1 | Wheat | golgi | 55.86 | 56.1 |
| TraesCS3A01G417000.2 | Wheat | golgi | 55.72 | 55.96 |
| Solyc05g046330.2.1 | Tomato | endoplasmic reticulum, nucleus | 60.2 | 55.76 |
| HORVU3Hr1G092660.1 | Barley | plasma membrane | 55.86 | 51.13 |
| GSMUA_Achr10P... | Banana | plasma membrane | 53.69 | 50.07 |
| Zm00001d042398_P001 | Maize | mitochondrion, plasma membrane | 53.11 | 48.67 |
Protein Annotations
| MapMan:18.1.1.5.6 | EntrezGene:827863 | ProteinID:AEE84408.1 | ProteinID:AEE84410.1 | ArrayExpress:AT4G21150 | EnsemblPlantsGene:AT4G21150 |
| RefSeq:AT4G21150 | TAIR:AT4G21150 | RefSeq:AT4G21150-TAIR-G | EnsemblPlants:AT4G21150.1 | TAIR:AT4G21150.1 | EMBL:AY058845 |
| EMBL:AY079034 | Unigene:At.19676 | ProteinID:CAA17534.1 | ProteinID:CAB79115.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004579 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 |
| GO:GO:0005886 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0006487 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008250 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009505 |
| GO:GO:0009506 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 |
| GO:GO:0016757 | GO:GO:0019538 | GO:GO:0030312 | Symbol:HAP6 | RefSeq:NP_001190785.1 | RefSeq:NP_193847.2 |
| PFAM:PF05817 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12640 | UniProt:Q93Z16 |
| SignalP:SignalP-noTM | InterPro:Swp1 | TMHMM:TMhelix | UniParc:UPI00000A8BC5 | SEG:seg | : |
Description
RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
Coordinates
chr4:+:11278429..11283885
Molecular Weight (calculated)
74672.3 Da
IEP (calculated)
7.626
GRAVY (calculated)
0.166
Length
691 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.