Factsheet for VIT_07s0005g03640.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67412	Soybean	plasma membrane	65.21	71.76
KRG95690	Soybean	endoplasmic reticulum	64.68	71.08
Solyc07g014700.2.1	Tomato	nucleus	60.05	69.85
KRH32199	Soybean	endoplasmic reticulum	62.83	68.94
CDX79039	Canola	plasma membrane	59.13	65.26
CDX82806	Canola	plasma membrane	58.86	65.06
AT4G21150.1	Thale cress	plasma membrane	58.73	64.25
CDY58482	Canola	plasma membrane	58.99	63.9
CDX94025	Canola	plasma membrane	58.73	63.34
Solyc05g046330.2.1	Tomato	endoplasmic reticulum, nucleus	62.17	63.0
GSMUA_Achr4P29530_001	Banana	plasma membrane	58.33	63.0
Bra013507.1-P	Field mustard	plasma membrane	55.56	60.34
Os01t0911200-01	Rice	plasma membrane	55.16	59.74
OQU88089	Sorghum	plasma membrane	54.63	59.6
Zm00001d012086_P004	Maize	plasma membrane	54.37	59.48
TraesCS3D01G412500.1	Wheat	golgi	53.84	59.16
Bra038784.1-P	Field mustard	plasma membrane	59.13	58.82
TraesCS3A01G417000.2	Wheat	golgi	53.44	58.72
CDY65340	Canola	plasma membrane	54.5	57.95
GSMUA_Achr10P...	Banana	plasma membrane	55.42	56.55
HORVU3Hr1G092660.1	Barley	plasma membrane	54.5	54.57
Zm00001d042398_P001	Maize	mitochondrion, plasma membrane	51.19	51.33

Protein Annotations

EntrezGene:100248126	wikigene:100248126	MapMan:18.1.1.5.6	ProteinID:CBI37135	ProteinID:CBI37135.3	UniProt:D7U318
EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004579	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005975	GO:GO:0006464	GO:GO:0006487
GO:GO:0008150	GO:GO:0008152	GO:GO:0008250	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	EntrezGene:LOC100248126	wikigene:LOC100248126	PFAM:PF05817
PANTHER:PTHR12640	InterPro:Swp1	TIGR:TC60422	TMHMM:TMhelix	UniParc:UPI0001BE489C	ArrayExpress:VIT_07s0005g03640
EnsemblPlantsGene:VIT_07s0005g03640	EnsemblPlants:VIT_07s0005g03640.t01	unigene:Vvi.2693	RefSeq:XP_002272576	RefSeq:XP_002272576.2	RefSeq:XP_002272576.3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:6526930..6539177

Molecular Weight (calculated)

83051.3 Da

IEP (calculated)

6.515

GRAVY (calculated)

0.157

Length

756 amino acids

Sequence
(BLAST)

001: MHSICLLTSW FVKLEKREGH FRQQELQYAK QNAKTLDQSL RFNHSLSSLL DFCNPSTNHS RSPLKGMARS PGGFLVLVLI LTISIHKAAS ILDSHQPVAL
101: ELFSPVHGSF GSLEESYDAL QTFQILGIEK KPDISDTTCT LVSKTLGSSS SSLKDLFYAL KVNGILKCDI DEEVFEGIKS RLQSVSNDAS SLLDFYYSIG
201: SLALIKEQAS KVDVLLTDAD GIFQSIKALS QSDGRWRYSS NNPESSTYAA GVAFEALARV VALASPEIDQ SRISTLGNDI VKLFDSIEKY DDGAFYFDEK
301: IVDAREHHGP LSTTASVVRG LTAFADVTSG SLNIPGDKIL GLAKFFLSVG IPGDAKDFFN QVYSLACLES NRVSIPLILS LPATVLSLTK NDQLKVRVNT
401: VLGSNAPPLT VKLLQAFSSS SKNAFIIENQ ELKFDPENAV HFLDALPENV DVGNYVFVFE ILLHDPEHEK IYATGSRTRV PIIITGVIKV DTAEIVILDS
501: DLGSVETKRK LDLAGENDVS LSANHLQKLR LSFQLATPLG HAFKPHQAFL KLKHETKVEH VFVVGSSGKD FAIVLDFLGL VEKFFYLSGR YDIQLTVGDA
601: VMENSFLQAL GHVELDLPEP PEKAPRPPPQ PVDSYLRYGP KAEIAHIFRA PEKLPPEQLS LAFLSLTILP LIVFLIGLLR LGVNLKNFPT SVVPATFAIL
701: FHLGLAAVLL LYVLFWWKLD LFTTLKILGL LGVFLLFVGH RLLSHLASAS AKLKSA

Best Arabidopsis Sequence Match ( AT4G21150.3 )
(BLAST)

001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

Arabidopsis Description

RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.