CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67412	Soybean	plasma membrane	94.77	94.91
KRH32199	Soybean	endoplasmic reticulum	78.49	78.37
Solyc07g014700.2.1	Tomato	nucleus	62.35	66.0
VIT_07s0005g03640.t01	Wine grape	plasma membrane	71.08	64.68
CDX82806	Canola	plasma membrane	63.08	63.45
CDX79039	Canola	plasma membrane	63.08	63.36
AT4G21150.1	Thale cress	plasma membrane	63.23	62.95
CDX94025	Canola	plasma membrane	63.66	62.48
CDY58482	Canola	plasma membrane	63.23	62.32
Solyc05g046330.2.1	Tomato	endoplasmic reticulum, nucleus	66.86	61.66
OQU88089	Sorghum	plasma membrane	61.92	61.47
GSMUA_Achr4P29530_001	Banana	plasma membrane	61.48	60.43
Zm00001d012086_P004	Maize	plasma membrane	60.47	60.2
Os01t0911200-01	Rice	plasma membrane	60.76	59.89
TraesCS3D01G412500.1	Wheat	golgi	59.59	59.59
Bra013507.1-P	Field mustard	plasma membrane	60.03	59.34
TraesCS3A01G417000.2	Wheat	golgi	59.3	59.3
Bra038784.1-P	Field mustard	plasma membrane	63.52	57.5
CDY65340	Canola	plasma membrane	58.28	56.4
HORVU3Hr1G092660.1	Barley	plasma membrane	59.88	54.57
GSMUA_Achr10P...	Banana	plasma membrane	58.28	54.12
Zm00001d042398_P001	Maize	mitochondrion, plasma membrane	57.27	52.25

Protein Annotations

EntrezGene:100806815	MapMan:18.1.1.5.6	EMBL:ACUP02012130	EnsemblPlantsGene:GLYMA_19G165800	GO:GO:0003674	GO:GO:0003824
GO:GO:0004579	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005975	GO:GO:0006464	GO:GO:0006487	GO:GO:0008150	GO:GO:0008152	GO:GO:0008250
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538
UniProt:K7MYQ2	EnsemblPlants:KRG95690	ProteinID:KRG95690	ProteinID:KRG95690.1	PFAM:PF05817	PANTHER:PTHR12640
SignalP:SignalP-noTM	InterPro:Swp1	TMHMM:TMhelix	UniParc:UPI000233F00F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:42692273..42701999

Molecular Weight (calculated)

74707.0 Da

IEP (calculated)

5.758

GRAVY (calculated)

0.202

Length

688 amino acids

Sequence
(BLAST)

001: MARNIAGLLA LLLAVSICGA VTIPGPVSDA HRSAALELFD GSFSSLEEAY EALRVFEILG IGNKPDVSTT TCKKVAENLE LSSPVKDLFY SLKVNGILKC
101: KVDGDVFKDI ALRLKATVND ASTLVDMYYS IGSLVLIKDQ ASDVDVLLTD ADGTFHSIKA LSQSDGRWRY SSDNPESSTY AAGLALEALA GVISLASSEI
201: DQSRVNTVKN DILKLFDSIE KYDDGTFYFD EKFVGGSEHQ GSLSTTSSVV QGVTAFAAVT SGKINLPGDK ILGLANFFLG IGIPGDAKDF FNQVESLALL
301: ENNRVSIPLV LSLPATVYSL SKKDQLKVRV NTVLGSAAPP LTVKLVRAFR SDAKDSAIIE SKELQYDQNN GIHVLEAFPN NVDVGTYAFV FEIALHDSAG
401: EKVYATGGQI HVPIYVTGII KVSNAEIAVL DSDLGSVETQ KTLDLAGNDV VSLSANHLQK LRFSFQLTTP HDHAFKPLQA FFKLKHETKH EHIFVVGNTG
501: KKFEIILDFL GLVEKFYYLS GRYDIELTVG DAVMENSFLW LLGQVDLDLP EAPEKAARLP PLPVDPYSRY GPKAEIAHLF RAPEKRPPQE LSLTFLGLTL
601: LPFIGFLVGL LRLGVNLKNF PSSAVPAAYA ILFQLGIATV LLLYVLFWLK LDLFTTLKTV GFLGAFLLFV GHRILSHLAS TSSKLKSA

Best Arabidopsis Sequence Match ( AT4G21150.3 )
(BLAST)

001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

Arabidopsis Description

RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.