CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79039	Canola	plasma membrane	96.34	96.2
AT4G21150.1	Thale cress	plasma membrane	90.5	89.58
CDX94025	Canola	plasma membrane	90.94	88.73
CDY58482	Canola	plasma membrane	90.5	88.68
CDY65340	Canola	plasma membrane	85.82	82.56
KRH67412	Soybean	plasma membrane	64.18	63.9
KRH32199	Soybean	endoplasmic reticulum	63.74	63.28
KRG95690	Soybean	endoplasmic reticulum	63.45	63.08
Solyc07g014700.2.1	Tomato	nucleus	57.6	60.62
VIT_07s0005g03640.t01	Wine grape	plasma membrane	65.06	58.86
GSMUA_Achr4P29530_001	Banana	plasma membrane	58.19	56.86
Zm00001d012086_P004	Maize	plasma membrane	57.31	56.73
OQU88089	Sorghum	plasma membrane	57.16	56.42
Os01t0911200-01	Rice	plasma membrane	57.46	56.3
TraesCS3D01G412500.1	Wheat	golgi	56.14	55.81
TraesCS3A01G417000.2	Wheat	golgi	55.99	55.67
Solyc05g046330.2.1	Tomato	endoplasmic reticulum, nucleus	59.8	54.83
HORVU3Hr1G092660.1	Barley	plasma membrane	56.14	50.86
GSMUA_Achr10P...	Banana	plasma membrane	54.09	49.93
Zm00001d042398_P001	Maize	mitochondrion, plasma membrane	52.49	47.61

Protein Annotations

KEGG:00510+2.4.99.18	KEGG:00513+2.4.99.18	MapMan:18.1.1.5.6	GO:A0A078D084	EnsemblPlants:CDX82806	ProteinID:CDX82806
ProteinID:CDX82806.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005975	GO:GO:0006464	GO:GO:0006487	GO:GO:0008150	GO:GO:0008152	GO:GO:0008250
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00138146001
PFAM:PF05817	PANTHER:PTHR12640	SignalP:SignalP-noTM	InterPro:Swp1	TMHMM:TMhelix	UniPathway:UPA00378
UniParc:UPI0004EEAB2D	SEG:seg	:	:	:	:

Description

BnaC01g12560D

Coordinates

chrLK031830:+:429076..434210

Molecular Weight (calculated)

74021.6 Da

IEP (calculated)

6.660

GRAVY (calculated)

0.198

Length

684 amino acids

Sequence
(BLAST)

001: MMERGLVRFL FLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSATCENVV KVLALSSSTL KDALYALSLN
101: GILKCKSGED VPKDIVSKLQ TGVKDAKLLL DFYYSVRGLV LVKEQFSGTD ISLGDAEAVF RSIKALSQSD GKWRYSPNNP ESSTFAAGLA FETLAGVISL
201: APSEIDHSLI QTLKTGITKL FDSIQKYDDG TFYFDESEGP ISTTASVIRG LKSFAASEST GLNLPGEKIV GLAKFFLGVG IPGDAKDFFN QIDALACLED
301: NRFSVPLILS LPSSVISLTK KEPLKVKVST VLGSKAPALS VKLAQALSSG SKGSSVINNQ ELKFDAESAT YFLESFPKNF DVGKYTFVFE ILLDESANEK
401: AYITEAQTKV PIAATGAITI ENAEIAVLDS DVGSVESQKK LDLTKDEAVS LSANHLQKLR LSFQLTTPIG HVFKPHQAFL KLKHESQVEH IFLVKTSGKK
501: SELVLDFLGL VEKLYYLSGK YEIQLTIGDA SMENSLLSNI GHIELDLPER PEKAARPPLQ PTDPYSRYVP KAEISHIFRV PEKLPAKQIS LVFLGLIVLP
601: FIGFLIGLTR LGVNIKSFPS SVGAATSALL FHGGIGAVLL LYVLFWLDLF TTLKALSLLG VFLLFVGHRT LSHLAAASNK LKSA

Best Arabidopsis Sequence Match ( AT4G21150.3 )
(BLAST)

001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

Arabidopsis Description

RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.