Factsheet for Solyc05g046330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g014700.2.1	Tomato	nucleus	69.97	80.31
KRG95690	Soybean	endoplasmic reticulum	61.66	66.86
KRH67412	Soybean	plasma membrane	61.39	66.67
KRH32199	Soybean	endoplasmic reticulum	60.05	65.02
VIT_07s0005g03640.t01	Wine grape	plasma membrane	63.0	62.17
GSMUA_Achr4P29530_001	Banana	plasma membrane	57.1	60.86
AT4G21150.1	Thale cress	plasma membrane	55.76	60.2
CDX82806	Canola	plasma membrane	54.83	59.8
CDX79039	Canola	plasma membrane	54.83	59.71
CDY58482	Canola	plasma membrane	54.69	58.45
CDX94025	Canola	plasma membrane	54.29	57.77
Os01t0911200-01	Rice	plasma membrane	53.89	57.59
OQU88089	Sorghum	plasma membrane	53.49	57.58
Zm00001d012086_P004	Maize	plasma membrane	53.08	57.31
TraesCS3D01G412500.1	Wheat	golgi	52.14	56.54
TraesCS3A01G417000.2	Wheat	golgi	52.14	56.54
Bra013507.1-P	Field mustard	plasma membrane	51.74	55.46
Bra038784.1-P	Field mustard	plasma membrane	54.69	53.68
CDY65340	Canola	plasma membrane	50.8	53.31
GSMUA_Achr10P...	Banana	plasma membrane	51.21	51.55
HORVU3Hr1G092660.1	Barley	plasma membrane	51.88	51.26
Zm00001d042398_P001	Maize	mitochondrion, plasma membrane	49.87	49.34

Protein Annotations

MapMan:18.1.1.5.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004579	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005975	GO:GO:0006464	GO:GO:0006487
GO:GO:0008150	GO:GO:0008152	GO:GO:0008250	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	UniProt:K4C0W6	PFAM:PF05817	PANTHER:PTHR12640
EnsemblPlantsGene:Solyc05g046330.2	EnsemblPlants:Solyc05g046330.2.1	InterPro:Swp1	TMHMM:TMhelix	UniParc:UPI0002766ACA	SEG:seg

Description

No Description!

Coordinates

chr5:-:58560977..58574905

Molecular Weight (calculated)

81455.7 Da

IEP (calculated)

8.561

GRAVY (calculated)

0.152

Length

746 amino acids

Sequence
(BLAST)

001: MQMEAIERCR TCWAIRYTEG VYLEYDTKNF CICFTLLYWS SPLTQTRKVP SPSIISRMAK VLGFLVLALS VLICEAAIFK PISESHRSAA LELFTPAHGS
101: LSSLEETYEA LRTFEVLGIK KQPDQRVATC VTVGDTLSSP TSALKDLFQA LRVNGLLNCE LNKKTLAGIA PRLKDAVKSA SSLLDYYYSV GSLVLIKGLN
201: SDVDVHLESA DSVVRSIKAL SQSDGRWRYS SNNPEFSTYA AGIALESLAG VISLASSEID QSLISMVKSD ISKLLDGLEK YDDGAYYFDE KLADAHGHQG
301: PLSASSAVVR GITAFAAVST ENLNLPGDKI LGLARFLLGA GVPGNAKDLY YQIEALTSLE NNRVSIPLIL SLPTSVLSLT RKDQLKVKVN TVLGATAPSL
401: TVKLKQIFSS GSKDASVIDQ DLKFDHKNGV HYLDALRKDI DVGSYIFSFE IVLHDSEHKM IYATGGRTKV PIYVTGVIKV DNADISVLDS DLGNIETRKK
501: LDLAGKNSIS LSANHLQKLR LSFQLTSPLG NALKPHQAFL KLSHESKVEH IFVVGNSGKQ FEIILDFLGL VEKFFYLSGR YDIQLTVGDA VMENSFLQPL
601: GSVELDLPEA PEKAARPPPQ AVDPSSRFGP KAEIAHIFRA PEKRPPSNLS YAFLALVLLP FVGFLVGLLR LRVNLKNFPT ASAPAAFAIL FHLAIVAVLS
701: LYSLFWLKLN LFTTLKALGF LGIFLLFVGH RTLSHLASTS AKLKSA

Best Arabidopsis Sequence Match ( AT4G21150.3 )
(BLAST)

001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

Arabidopsis Description

RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.