Factsheet for HORVU3Hr1G092660.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane
MultiLoc:	golgi
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G412500.1	Wheat	golgi	89.4	98.11
TraesCS3A01G417000.2	Wheat	golgi	89.4	98.11
Os01t0911200-01	Rice	plasma membrane	78.54	84.96
OQU88089	Sorghum	plasma membrane	77.75	84.7
Zm00001d012086_P004	Maize	plasma membrane	75.36	82.34
Zm00001d042398_P001	Maize	mitochondrion, plasma membrane	70.86	70.95
GSMUA_Achr4P29530_001	Banana	plasma membrane	58.68	63.29
KRH67412	Soybean	plasma membrane	54.83	60.26
KRG95690	Soybean	endoplasmic reticulum	54.57	59.88
KRH32199	Soybean	endoplasmic reticulum	53.38	58.49
CDX82806	Canola	plasma membrane	50.86	56.14
AT4G21150.1	Thale cress	plasma membrane	51.13	55.86
Solyc07g014700.2.1	Tomato	nucleus	48.08	55.85
CDX79039	Canola	plasma membrane	50.6	55.77
GSMUA_Achr10P...	Banana	plasma membrane	54.7	55.74
CDY58482	Canola	plasma membrane	50.6	54.73
CDX94025	Canola	plasma membrane	50.73	54.64
VIT_07s0005g03640.t01	Wine grape	plasma membrane	54.57	54.5
Bra013507.1-P	Field mustard	plasma membrane	48.21	52.3
Solyc05g046330.2.1	Tomato	endoplasmic reticulum, nucleus	51.26	51.88
CDY65340	Canola	plasma membrane	47.95	50.91
Bra038784.1-P	Field mustard	plasma membrane	51.13	50.79

Protein Annotations

MapMan:18.1.1.5.6	UniProt:A0A287MAM1	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005794
GO:GO:0005886	GO:GO:0005975	GO:GO:0006464	GO:GO:0006487	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008250	GO:GO:0009058	GO:GO:0009409	GO:GO:0009505	GO:GO:0009506
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0030312
EnsemblPlantsGene:HORVU3Hr1G092660	EnsemblPlants:HORVU3Hr1G092660.1	PFAM:PF05817	PANTHER:PTHR12640	InterPro:Swp1	TMHMM:TMhelix
UniParc:UPI000B46FF6B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:639073931..639081677

Molecular Weight (calculated)

81840.7 Da

IEP (calculated)

7.366

GRAVY (calculated)

0.071

Length

755 amino acids

Sequence
(BLAST)

001: MNQTGHYTNL KAVHYPEPRR RGERPPGEIF LVVPFPQPSS RSGHSHPLLN PSPPPSPLRP APPATPAMAW RLPPLAVLLL LVAAAVSPLS SAVRPVSDAH
101: RSVAAELFAA SPDDLETTYE AVRTFKILGV QRDKGLDGKA CKLAAHTLSS SSSPAKDLFH AVKIAGVLGC GVDAGVYDDV ASRLKAVIKD TNSLLEFYYS
201: VGGLLSLKEQ GHSVVLSDAD STFHAIKALS QSDGRWRYDT NSAESSTFAA GIALEALAGV VSLSDAEVDP SMIGVVKNDI VKLFGTIKSY DDGTFYFDEK
301: YVDGSEYKGP ITTSASVVRG VTSFANVVSG KLNIPGEKIL GLAKFFLGIG LPGSAKDCFN QIESLSLLEN NRIFVPLILS LPSKVLSLTS KDQLKVEVTT
401: VFGSAAPPLR VNLVQVLGSD SKVITTDSKE LQFDLDNNVH YLDITPLKID VGKYSLVFEI TLQDSEHETV YTTGGRNTEA VVVTGLIKVD KAEIGISEND
501: AGSAESVEKL DLLKDTKVSL SANHLQKLRL SFQLSTPLGR TFKPHQVFLK LKHESKVEHL FVVPGSARQF KIVLDFLGLV EKFYYLSGTY DLELSVGDAS
601: MENSFLRALG QLDLDLPEAP EKAPRPPAQA VDPLAKFRPQ KEIEHIFRVP EKRPPQEVSL AFTGLTLLPF IGFLIGLMRL GVNLKNFPSL PGPAAFASLF
701: HAGIGAVLLL YVLFWVKLDL FTTLKYLSFL VVFLVFVGHR TLSHLSNTAA KQKTA

Best Arabidopsis Sequence Match ( AT4G21150.3 )
(BLAST)

001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

Arabidopsis Description

RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.