Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G284000.1 | Wheat | cytosol | 97.87 | 97.18 |
| TraesCS6D01G222900.1 | Wheat | cytosol | 97.16 | 96.48 |
| HORVU6Hr1G061420.4 | Barley | cytosol | 85.82 | 74.23 |
| Zm00001d017425_P001 | Maize | cytosol | 73.05 | 74.1 |
| Os02t0649800-01 | Rice | plasma membrane | 71.63 | 73.19 |
| TraesCS1A01G181500.1 | Wheat | cytosol, golgi | 53.19 | 55.97 |
| Solyc06g053170.2.1 | Tomato | cytosol, plastid | 14.18 | 51.28 |
| KRG97223 | Soybean | endoplasmic reticulum | 51.06 | 51.06 |
| KRH68944 | Soybean | cytosol | 49.65 | 49.65 |
| AT2G46650.1 | Thale cress | cytosol | 46.1 | 49.24 |
| OQU85747 | Sorghum | mitochondrion | 74.47 | 49.07 |
| KRH06410 | Soybean | cytosol | 49.65 | 47.95 |
| KRH47845 | Soybean | endoplasmic reticulum | 48.23 | 47.89 |
| CDY61721 | Canola | cytosol | 43.97 | 46.27 |
| CDY27310 | Canola | cytosol | 43.97 | 46.27 |
| Bra039268.1-P | Field mustard | cytosol | 43.97 | 46.27 |
| CDY41545 | Canola | cytosol | 43.26 | 45.52 |
| CDX80035 | Canola | cytosol | 43.26 | 45.52 |
| Bra004518.1-P | Field mustard | cytosol | 43.26 | 45.52 |
| TraesCS5A01G138900.1 | Wheat | cytosol, golgi | 41.84 | 44.03 |
| TraesCS3A01G524000.2 | Wheat | cytosol, golgi, plastid | 42.55 | 43.8 |
| TraesCS5A01G391900.1 | Wheat | cytosol | 35.46 | 37.04 |
| TraesCS7A01G437700.1 | Wheat | cytosol | 38.3 | 36.24 |
| TraesCS5A01G185800.1 | Wheat | endoplasmic reticulum, extracellular | 24.82 | 29.66 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G240700.1 | EnsemblPlantsGene:TraesCS6A01G240700 | Gene3D:3.10.120.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0020037 |
| InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | InterPro:IPR001199 | InterPro:IPR036400 | PANTHER:PTHR19359 |
| PANTHER:PTHR19359:SF30 | PFAM:PF00173 | PFscan:PS50255 | PRINTS:PR00363 | ScanProsite:PS00191 | SEG:seg |
| SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | MapMan:21.9.1.7.1.3 | : | : |
Description
No Description!
Coordinates
chr6A:-:451988522..451989170
Molecular Weight (calculated)
15018.1 Da
IEP (calculated)
6.246
GRAVY (calculated)
0.025
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGKVYSF QEVRKHSQRK DCWLIISGKV YDVTPFMEEH PGGDEVLLAC TGKDATADFE DIGHSDSAKE LMPQYCIGEV DAATVPAKLA RAVLPAKGAA
101: APAPRASTGQ GVWLTVLQLA LPLLLVAMAF ALQNFAKTKT E
101: APAPRASTGQ GVWLTVLQLA LPLLLVAMAF ALQNFAKTKT E
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
Arabidopsis Description
CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.