Factsheet for TraesCS6A01G083200.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, vacuole, plasma membrane

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, plastid, vacuole
Any Predictor:	peroxisome, plastid, secretory
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G181500.1
TraesCS1B01G199300.1
TraesCS1D01G184800.1
TraesCS2A01G502400.1
TraesCS2B01G530500.1
TraesCS2D01G503000.1
TraesCS3A01G417000.2	endoplasmic reticulum
TraesCS3A01G524000.2
TraesCS3D01G412500.1	endoplasmic reticulum
TraesCS3D01G529500.1
TraesCS5A01G138900.1
TraesCS5A01G391900.1
TraesCS5B01G138200.1
TraesCS5B01G396800.1
TraesCS5D01G152500.1
TraesCS5D01G401800.1
TraesCS6A01G240700.1
TraesCS6B01G284000.1
TraesCS6D01G222900.1
TraesCS7A01G489500.1
TraesCS7B01G392600.1
TraesCS7D01G475900.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47120.1	TraesCS5A01G391900.1	AT1G26340.1	19054355
AT5G47120.1	TraesCS5B01G396800.1	AT1G26340.1	19054355
AT5G47120.1	TraesCS5D01G401800.1	AT1G26340.1	19054355
AT5G47120.1	TraesCS7A01G489500.1	AT1G78900.1	23782494
AT5G47120.1	TraesCS7B01G392600.1	AT1G78900.1	23782494
AT5G47120.1	TraesCS7D01G475900.2	AT1G78900.1	23782494
AT5G47120.1	TraesCS2A01G502400.1	AT2G18960.1	23782494
AT5G47120.1	TraesCS2B01G530500.1	AT2G18960.1	23782494
AT5G47120.1	TraesCS2D01G503000.1	AT2G18960.1	23782494
AT5G47120.1	TraesCS3A01G524000.2	AT2G32720.1	19054355
AT5G47120.1	TraesCS3D01G529500.1	AT2G32720.1	19054355
AT5G47120.1	TraesCS5A01G138900.1	AT2G32720.1	19054355
AT5G47120.1	TraesCS5B01G138200.1	AT2G32720.1	19054355
AT5G47120.1	TraesCS5D01G152500.1	AT2G32720.1	19054355
AT5G47120.1	TraesCS6A01G240700.1	AT2G46650.1	19054355
AT5G47120.1	TraesCS6B01G284000.1	AT2G46650.1	19054355
AT5G47120.1	TraesCS6D01G222900.1	AT2G46650.1	19054355
AT5G47120.1	TraesCS3A01G417000.2	AT4G21150.1	23782494
AT5G47120.1	TraesCS3D01G412500.1	AT4G21150.1	23782494
AT5G47120.1	TraesCS3A01G417000.2	AT4G21150.1	23782494
AT5G47120.1	TraesCS3D01G412500.1	AT4G21150.1	23782494
AT5G47120.1	TraesCS3A01G524000.2	AT5G48810.1	19054355
AT5G47120.1	TraesCS3D01G529500.1	AT5G48810.1	19054355
AT5G47120.1	TraesCS5A01G138900.1	AT5G48810.1	19054355
AT5G47120.1	TraesCS5B01G138200.1	AT5G48810.1	19054355
AT5G47120.1	TraesCS5D01G152500.1	AT5G48810.1	19054355
AT5G47120.1	TraesCS1A01G181500.1	AT5G53560.1	19054355
AT5G47120.1	TraesCS1B01G199300.1	AT5G53560.1	19054355
AT5G47120.1	TraesCS1D01G184800.1	AT5G53560.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G113900.1	Wheat	plasma membrane	99.6	99.6
TraesCS6D01G077000.1	Wheat	plasma membrane	98.79	98.79
Os02t0125300-01	Rice	plasma membrane	85.02	84.34
EES04425	Sorghum	plastid	86.23	82.56
Zm00001d053952_P001	Maize	plasma membrane	83.81	79.92
HORVU6Hr1G014450.1	Barley	nucleus	97.57	77.0
GSMUA_Achr7P07470_001	Banana	plasma membrane	73.68	75.52
CDY33515	Canola	endoplasmic reticulum, golgi	27.94	72.63
Bra024963.1-P	Field mustard	endoplasmic reticulum, golgi	27.53	71.58
AT5G47120.1	Thale cress	plasma membrane	69.23	69.23
CDY25984	Canola	plasma membrane	68.42	68.42
CDY43441	Canola	plasma membrane	67.61	67.61
Bra017502.1-P	Field mustard	plasma membrane	67.61	67.61
PGSC0003DMT400067509	Potato	plasma membrane	67.61	67.34
Bra022106.1-P	Field mustard	plasma membrane	67.21	67.21
VIT_00s1665g00010.t01	Wine grape	golgi, plasma membrane, vacuole	58.7	67.13
Solyc08g077980.2.1	Tomato	plasma membrane	67.61	67.07
CDY28973	Canola	plasma membrane	66.8	66.8
CDY40569	Canola	plasma membrane	66.4	66.4
KRH77301	Soybean	plasma membrane	63.97	64.75
KRH57502	Soybean	plasma membrane	62.75	62.75
Zm00001d015091_P003	Maize	mitochondrion, nucleus, peroxisome, plasma membrane	80.57	60.3
KRH04210	Soybean	plasma membrane	57.89	58.13
KRH28186	Soybean	peroxisome	63.97	57.66
AT4G17580.1	Thale cress	plasma membrane	49.8	49.8
AT5G47130.2	Thale cress	endoplasmic reticulum, extracellular, golgi	45.34	49.56
KRH24687	Soybean	extracellular	20.65	43.22
Solyc01g090000.1.1	Tomato	plasma membrane	25.91	26.67

Protein Annotations

EnsemblPlants:TraesCS6A01G083200.1	EnsemblPlantsGene:TraesCS6A01G083200	InterPro:Bax_inhibitor_1-related	PANTHER:PTHR23291	PANTHER:PTHR23291:SF76	PFAM:PF01027
SEG:seg	TIGR:cd10430	TMHMM:TMhelix	MapMan:27.2.6	:	:

Description

No Description!

Coordinates

chr6A:+:51947908..51953052

Molecular Weight (calculated)

27062.3 Da

IEP (calculated)

8.068

GRAVY (calculated)

0.532

Length

247 amino acids

Sequence
(BLAST)

001: MDAFYSTSSA AASGWGYDSL KNFREISPAA QSHLKLVYLT LCFALASSAV GAYLHIALNI GGMLTMLACI GTIAWMFSVP VYEERKRFGL LMGAALLEGA
101: SVGPLIELAI DFDPSILVTG FVGTAIAFGC FSGAAIIAKR REYLYLGGLL SSGLSILLWL QFATSIFGHS SGSFMFEVYF GLLIFLGYMV YDTQEIIERA
201: HHGDMDYIKH ALTLFTDFVA VLVRILIIML KNAGDKSEDK KKRKRRS

Best Arabidopsis Sequence Match ( AT5G47120.1 )
(BLAST)

001: MDAFSSFFDS QPGSRSWSYD SLKNFRQISP AVQNHLKRVY LTLCCALVAS AFGAYLHVLW NIGGILTTIG CIGTMIWLLS CPPYEHQKRL SLLFVSAVLE
101: GASVGPLIKV AIDVDPSILI TAFVGTAIAF VCFSAAAMLA RRREYLYLGG LLSSGLSMLM WLQFASSIFG GSASIFKFEL YFGLLIFVGY MVVDTQEIIE
201: KAHLGDMDYV KHSLTLFTDF VAVFVRILII MLKNSADKEE KKKKRRN

Arabidopsis Description

BI-1Bax inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LD45]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.