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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G047990.4
HORVU2Hr1G111640.2
HORVU3Hr1G092660.1 endoplasmic reticulum
HORVU3Hr1G114360.3
HORVU5Hr1G045040.1
HORVU5Hr1G095930.3
HORVU6Hr1G061420.4
HORVU6Hr1G069640.1
HORVU7Hr1G109770.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G47120.1 HORVU5Hr1G095930.3 AT1G26340.1 19054355
AT5G47120.1 HORVU6Hr1G069640.1 AT1G78900.1 23782494
AT5G47120.1 HORVU7Hr1G109770.1 AT1G78900.1 23782494
AT5G47120.1 HORVU2Hr1G111640.2 AT2G18960.1 23782494
AT5G47120.1 HORVU3Hr1G114360.3 AT2G32720.1 19054355
AT5G47120.1 HORVU5Hr1G045040.1 AT2G32720.1 19054355
AT5G47120.1 HORVU6Hr1G061420.4 AT2G46650.1 19054355
AT5G47120.1 HORVU3Hr1G092660.1 AT4G21150.1 23782494
AT5G47120.1 HORVU3Hr1G092660.1 AT4G21150.1 23782494
AT5G47120.1 HORVU3Hr1G114360.3 AT5G48810.1 19054355
AT5G47120.1 HORVU5Hr1G045040.1 AT5G48810.1 19054355
AT5G47120.1 HORVU1Hr1G047990.4 AT5G53560.1 19054355
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G077000.1 Wheat plasma membrane 77.96 98.79
TraesCS6B01G113900.1 Wheat plasma membrane 77.32 97.98
TraesCS6A01G083200.1 Wheat peroxisome, plasma membrane, plastid, vacuole 77.0 97.57
Os02t0125300-01 Rice plasma membrane 67.73 85.14
EES04425 Sorghum plastid 68.05 82.56
Zm00001d053952_P001 Maize plasma membrane 66.13 79.92
GSMUA_Achr7P07470_001 Banana plasma membrane 58.47 75.93
Bra024963.1-P Field mustard endoplasmic reticulum, golgi 21.73 71.58
CDY33515 Canola endoplasmic reticulum, golgi 21.73 71.58
AT5G47120.1 Thale cress plasma membrane 54.63 69.23
CDY25984 Canola plasma membrane 54.63 69.23
CDY43441 Canola plasma membrane 53.99 68.42
Bra017502.1-P Field mustard plasma membrane 53.99 68.42
Bra022106.1-P Field mustard plasma membrane 53.67 68.02
CDY28973 Canola plasma membrane 53.35 67.61
Solyc08g077980.2.1 Tomato plasma membrane 53.67 67.47
PGSC0003DMT400067509 Potato plasma membrane 53.35 67.34
CDY40569 Canola plasma membrane 53.04 67.21
VIT_00s1665g00010.t01 Wine grape golgi, plasma membrane, vacuole 46.01 66.67
KRH77301 Soybean plasma membrane 50.8 65.16
Zm00001d015091_P003 Maize mitochondrion, nucleus, peroxisome, plasma membrane 65.81 62.42
KRH57502 Soybean plasma membrane 48.88 61.94
KRH28186 Soybean peroxisome 50.8 58.03
KRH04210 Soybean plasma membrane 45.05 57.32
AT5G47130.2 Thale cress endoplasmic reticulum, extracellular, golgi 35.78 49.56
AT4G17580.1 Thale cress plasma membrane 38.98 49.39
KRH24687 Soybean extracellular 16.29 43.22
Solyc01g090000.1.1 Tomato plasma membrane 20.45 26.67
Protein Annotations
EnsemblPlants:HORVU6Hr1G014450.1EnsemblPlantsGene:HORVU6Hr1G014450InterPro:Bax_inhibitor_1-relatedPANTHER:PTHR23291PANTHER:PTHR23291:SF76PFAM:PF01027
SEG:segTMHMM:TMhelixMapMan:27.2.6:::
Description
No Description!
Coordinates
chrchr6H:-:30651156..30657609
Molecular Weight (calculated)
33784.1 Da
IEP (calculated)
9.284
GRAVY (calculated)
0.259
Length
313 amino acids
Sequence
(BLAST)
001: XIVAVVITSV RNTSVHPSIQ SSGEGEKQKE KNPPQNASAG QARNLACEAR PPRSDSIRRA GAGAGMDTFY STSSAAASGW GHDSLKNFRQ ISPAVQSHLK
101: LVYLTLCFAL ASSAVGAYLH IALNIGGMLT MLACVGTIAW MFSVPVYEEQ RKRFGLLMGA ALLEGASVGP LIELAIDFDP SILVTGFVGT AIAFGCFSGA
201: AIIAKRREYL YLGGLLSSGL SILLWLQFAT SIFGHSSGSF MFEVYFGLLI FLGYMVYDTQ EIIERAHHGD MDYIKHALTL FTDFVAVLVR VLIIMLKNAG
301: DKSEDKKKRK RRS
Best Arabidopsis Sequence Match ( AT5G47120.1 )
(BLAST)
001: MDAFSSFFDS QPGSRSWSYD SLKNFRQISP AVQNHLKRVY LTLCCALVAS AFGAYLHVLW NIGGILTTIG CIGTMIWLLS CPPYEHQKRL SLLFVSAVLE
101: GASVGPLIKV AIDVDPSILI TAFVGTAIAF VCFSAAAMLA RRREYLYLGG LLSSGLSMLM WLQFASSIFG GSASIFKFEL YFGLLIFVGY MVVDTQEIIE
201: KAHLGDMDYV KHSLTLFTDF VAVFVRILII MLKNSADKEE KKKKRRN
Arabidopsis Description
BI-1Bax inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LD45]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.