Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1D01G018500.1 | cytosol |
| TraesCS5A01G019200.1 | cytosol, nucleus |
| TraesCS5A01G416500.2 | cytosol, nucleus |
| TraesCS5B01G016700.1 | cytosol, nucleus |
| TraesCS5B01G418800.1 | cytosol, nucleus |
| TraesCS5D01G024600.1 | cytosol, nucleus |
| TraesCS5D01G424200.1 | cytosol, nucleus |
| TraesCS6A01G083200.1 | cytosol |
| TraesCS6B01G113900.1 | cytosol |
| TraesCS6D01G077000.1 | cytosol |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G524000.2 | Wheat | cytosol, golgi, plastid | 97.08 | 97.08 |
| EES02143 | Sorghum | cytosol | 91.24 | 92.59 |
| Zm00001d041963_P001 | Maize | plasma membrane | 89.78 | 91.11 |
| Zm00001d011786_P001 | Maize | plasma membrane | 88.32 | 89.63 |
| TraesCS5D01G152500.1 | Wheat | golgi | 79.56 | 81.34 |
| GSMUA_Achr3P19410_001 | Banana | cytosol | 77.37 | 79.1 |
| Bra022898.1-P | Field mustard | cytosol | 76.64 | 78.36 |
| AT2G32720.1 | Thale cress | cytosol | 75.91 | 77.61 |
| GSMUA_Achr6P06700_001 | Banana | cytosol | 75.91 | 77.61 |
| CDX79471 | Canola | cytosol | 75.91 | 77.61 |
| CDX84725 | Canola | cytosol | 75.18 | 76.87 |
| PGSC0003DMT400051945 | Potato | cytosol | 73.72 | 76.52 |
| CDY19161 | Canola | cytosol | 73.72 | 75.37 |
| CDY23792 | Canola | cytosol | 73.72 | 75.37 |
| Bra021809.1-P | Field mustard | cytosol | 73.72 | 75.37 |
| Bra005564.1-P | Field mustard | cytosol | 73.72 | 75.37 |
| KRG99574 | Soybean | cytosol, endoplasmic reticulum | 73.72 | 74.81 |
| CDY59638 | Canola | cytosol | 72.99 | 74.63 |
| PGSC0003DMT400003091 | Potato | cytosol | 72.99 | 74.07 |
| HORVU3Hr1G114360.3 | Barley | plasma membrane | 93.43 | 73.99 |
| PGSC0003DMT400045531 | Potato | cytosol | 71.53 | 73.68 |
| KRH66053 | Soybean | endoplasmic reticulum | 72.26 | 73.33 |
| VIT_07s0005g06290.t01 | Wine grape | cytosol | 70.8 | 72.93 |
| CDX86279 | Canola | cytosol | 67.15 | 66.67 |
| CDX85364 | Canola | cytosol | 67.15 | 66.67 |
| Bra037461.1-P | Field mustard | cytosol | 66.42 | 65.94 |
| AT5G48810.1 | Thale cress | cytosol | 66.42 | 65.0 |
| CDY19937 | Canola | cytosol | 65.69 | 64.29 |
| Bra036160.1-P | Field mustard | cytosol | 65.69 | 64.29 |
| CDY12180 | Canola | cytosol | 72.99 | 64.1 |
| KRG99780 | Soybean | cytosol | 64.23 | 63.77 |
| CDY00045 | Canola | cytosol | 63.5 | 62.14 |
| KRH46744 | Soybean | endoplasmic reticulum | 63.5 | 61.27 |
| TraesCS1D01G184800.1 | Wheat | cytosol | 57.66 | 58.96 |
| Solyc06g053180.2.1 | Tomato | plastid | 32.85 | 52.94 |
| TraesCS6D01G222900.1 | Wheat | cytosol | 43.8 | 42.25 |
| PGSC0003DMT400019916 | Potato | cytosol | 40.15 | 38.73 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 68.61 | 38.37 |
| TraesCS5D01G401800.1 | Wheat | cytosol | 36.5 | 37.04 |
| TraesCS7D01G427500.1 | Wheat | mitochondrion, plastid | 41.61 | 25.56 |
| TraesCS5D01G190900.1 | Wheat | endoplasmic reticulum, extracellular | 17.52 | 20.34 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G529500.1 | EnsemblPlantsGene:TraesCS3D01G529500 | Gene3D:3.10.120.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0020037 |
| InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | InterPro:IPR001199 | InterPro:IPR036400 | PANTHER:PTHR19359 |
| PANTHER:PTHR19359:SF66 | PFAM:PF00173 | PFscan:PS50255 | PRINTS:PR00363 | ScanProsite:PS00191 | SMART:SM01117 |
| SUPFAM:SSF55856 | TMHMM:TMhelix | MapMan:21.9.1.7.1.3 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:606896297..606898122
Molecular Weight (calculated)
15040.9 Da
IEP (calculated)
4.909
GRAVY (calculated)
-0.198
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGGKLFT LEEVAKHSSK DDCWLVIGGK VYNVTKFLDD HPGGDDVLLS STAKDATDDF EDVGHSTTAR AMMDEYYVGE IDATTIPTKV KYTPPKQPHY
101: NQDKTPEFVI KILQFLVPLA ILGLAVAVRI YTKADSV
101: NQDKTPEFVI KILQFLVPLA ILGLAVAVRI YTKADSV
001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
Arabidopsis Description
CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.