Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G024600.1 | Wheat | cytosol | 97.9 | 98.31 |
| TraesCS5A01G019200.1 | Wheat | cytosol | 97.48 | 97.89 |
| HORVU0Hr1G009740.7 | Barley | cytosol | 97.48 | 97.89 |
| EES16419 | Sorghum | endoplasmic reticulum | 84.87 | 85.23 |
| Os12t0628400-01 | Rice | cytosol | 82.77 | 82.77 |
| GSMUA_Achr8P14090_001 | Banana | cytosol | 78.57 | 78.9 |
| GSMUA_Achr11P... | Banana | cytosol | 78.15 | 78.48 |
| Zm00001d031149_P001 | Maize | cytosol, endoplasmic reticulum, plasma membrane | 84.45 | 75.28 |
| PGSC0003DMT400054396 | Potato | cytosol | 73.53 | 74.15 |
| Solyc02g070050.2.1 | Tomato | extracellular | 50.0 | 73.91 |
| TraesCS5B01G418800.1 | Wheat | cytosol | 73.53 | 73.84 |
| KRH36837 | Soybean | endoplasmic reticulum, plasma membrane | 70.59 | 71.19 |
| CDY43657 | Canola | cytosol, plasma membrane, plastid | 70.17 | 70.46 |
| CDY43655 | Canola | cytosol, plasma membrane, plastid | 70.17 | 70.46 |
| AT2G34770.1 | Thale cress | cytosol | 70.17 | 70.46 |
| CDX84628 | Canola | cytosol, endoplasmic reticulum, plastid | 69.33 | 69.62 |
| CDX79577 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 68.91 | 69.2 |
| GSMUA_Achr2P10740_001 | Banana | cytosol | 66.81 | 67.09 |
| Bra005394.1-P | Field mustard | plasma membrane | 66.39 | 66.67 |
| KRH11817 | Soybean | cytosol, golgi, plasma membrane | 71.85 | 66.02 |
| CDY46240 | Canola | plasma membrane | 66.39 | 65.83 |
| CDY15865 | Canola | plasma membrane | 66.39 | 65.83 |
| KRH58400 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 65.55 | 65.27 |
| KRH42277 | Soybean | endoplasmic reticulum, plasma membrane | 65.55 | 65.27 |
| CDX84282 | Canola | cytosol, endoplasmic reticulum, peroxisome | 66.81 | 64.37 |
| Solyc02g022890.1.1 | Tomato | extracellular | 18.49 | 63.77 |
| GSMUA_Achr2P10760_001 | Banana | cytosol | 19.33 | 61.33 |
| PGSC0003DMT400019648 | Potato | plasma membrane | 63.03 | 60.24 |
| CDY31640 | Canola | cytosol, golgi, plasma membrane | 54.62 | 59.36 |
| VIT_10s0003g05380.t01 | Wine grape | plastid | 69.75 | 56.27 |
| GSMUA_Achr11P... | Banana | extracellular | 14.71 | 53.03 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G016700.1 | EnsemblPlantsGene:TraesCS5B01G016700 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR12863 | PANTHER:PTHR12863:SF2 | PFAM:PF04116 | SEG:seg |
| TMHMM:TMhelix | MapMan:5.4.10 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:15321401..15323490
Molecular Weight (calculated)
27535.3 Da
IEP (calculated)
8.248
GRAVY (calculated)
0.043
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAQAFTVDL DKPLVFQQVG HLEEQYQDWV HQPIVSKEGP RFFANDVLEF LTRTKWWAVP LIWLPVVCWC LNTSIQMGHT VPQVALMVVA GIFIWTLVEY
101: VLHRYLFHID TKSYWTNTAH YLLHGCHHKH PMDGLRLVFP PTAAAILCYP FWNFVRLFTT TTTTPGVFGG GLLGYVIYDC THYYLHHAQP SFDPAKYLKK
201: YHLNHHFRIQ NKGFGITSTL WDHVFGTLPS TKTADKSS
101: VLHRYLFHID TKSYWTNTAH YLLHGCHHKH PMDGLRLVFP PTAAAILCYP FWNFVRLFTT TTTTPGVFGG GLLGYVIYDC THYYLHHAQP SFDPAKYLKK
201: YHLNHHFRIQ NKGFGITSTL WDHVFGTLPS TKTADKSS
001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
Arabidopsis Description
FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.