CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79471
CDX84725
CDY12180
CDY19161
CDY23792
CDY59638

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34770.1	CDX79471	AT2G32720.1	19054355
AT2G34770.1	CDX84725	AT2G32720.1	19054355
AT2G34770.1	CDY12180	AT2G32720.1	19054355
AT2G34770.1	CDY19161	AT2G32720.1	19054355
AT2G34770.1	CDY23792	AT2G32720.1	19054355
AT2G34770.1	CDY59638	AT2G32720.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79577	Canola	cytosol, endoplasmic reticulum, plasma membrane	97.89	97.89
CDY43655	Canola	cytosol, plasma membrane, plastid	91.98	91.98
CDY43657	Canola	cytosol, plasma membrane, plastid	91.98	91.98
AT2G34770.1	Thale cress	cytosol	86.5	86.5
CDX84282	Canola	cytosol, endoplasmic reticulum, peroxisome	87.34	83.81
CDY46240	Canola	plasma membrane	84.39	83.33
CDY15865	Canola	plasma membrane	83.12	82.08
CDY31640	Canola	cytosol, golgi, plasma membrane	73.0	79.0
GSMUA_Achr8P14090_001	Banana	cytosol	76.79	76.79
GSMUA_Achr11P...	Banana	cytosol	76.37	76.37
Zm00001d034319_P001	Maize	cytosol	73.42	73.42
EER93353	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	73.42	73.42
EES16419	Sorghum	endoplasmic reticulum	73.0	73.0
Os12t0628400-01	Rice	cytosol	71.31	71.01
TraesCS5D01G024600.1	Wheat	cytosol	70.89	70.89
HORVU0Hr1G009740.7	Barley	cytosol	70.46	70.46
TraesCS5A01G019200.1	Wheat	cytosol	70.46	70.46
TraesCS5D01G424200.1	Wheat	cytosol	70.46	70.46
CDX82786	Canola	cytosol	70.04	70.04
TraesCS5B01G418800.1	Wheat	cytosol	70.04	70.04
CDX79011	Canola	cytosol	70.04	70.04
TraesCS5B01G016700.1	Wheat	cytosol	69.62	69.33
GSMUA_Achr2P10740_001	Banana	cytosol	67.93	67.93
Zm00001d031149_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	73.42	65.17
TraesCS5A01G416500.2	Wheat	endoplasmic reticulum, plasma membrane	70.04	63.36
GSMUA_Achr2P10760_001	Banana	cytosol	17.3	54.67
CDY37569	Canola	cytosol	23.63	53.33
GSMUA_Achr11P...	Banana	extracellular	13.5	48.48
HORVU5Hr1G100890.11	Barley	plastid	65.82	44.07

Protein Annotations

EnsemblPlants:CDX84628	EnsemblPlantsGene:GSBRNA2T00141899001	GO:A0A078DBD6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0016491	GO:GO:0055114	InterPro:Fatty_acid_hydroxylase	PANTHER:PTHR12863	PANTHER:PTHR12863:SF2	PFAM:PF04116
ProteinID:CDX84628	ProteinID:CDX84628.1	TMHMM:TMhelix	UniParc:UPI0004EE4BA4	MapMan:5.4.10	:

Description

BnaA03g16020D

Coordinates

chrLK031838:-:471728..473822

Molecular Weight (calculated)

27493.6 Da

IEP (calculated)

9.322

GRAVY (calculated)

0.118

Length

237 amino acids

Sequence
(BLAST)

001: MVAQGFTVDL NKPLVFQVGH LGEAYEEWVH QPIVTKEGPR FFHSDFWEFL TLTRWWVIPV IWLPVACWCI SKSVSMGLSL TEIVPLMALG IFIWTFIEYT
101: LHRFLFHIKT KSYWGNTAHY LLHGCHHKHP MDHLRLVFPP AATAVLCFPF WNLVKLFATP STTPALFGGG MLGYVMYDIT HYYLHHAQPT RAVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPKREQ

Best Arabidopsis Sequence Match ( AT2G34770.1 )
(BLAST)

001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ

Arabidopsis Description

FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.