Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G424200.1 | Wheat | cytosol | 98.31 | 98.31 |
TraesCS5A01G416500.2 | Wheat | endoplasmic reticulum, plasma membrane | 95.36 | 86.26 |
Zm00001d034319_P001 | Maize | cytosol | 82.7 | 82.7 |
EER93353 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 82.28 | 82.28 |
GSMUA_Achr8P14090_001 | Banana | cytosol | 76.79 | 76.79 |
GSMUA_Achr11P... | Banana | cytosol | 75.95 | 75.95 |
TraesCS5B01G016700.1 | Wheat | cytosol | 73.84 | 73.53 |
PGSC0003DMT400054396 | Potato | cytosol | 71.31 | 71.61 |
Solyc02g070050.2.1 | Tomato | extracellular | 48.1 | 70.81 |
KRH36837 | Soybean | endoplasmic reticulum, plasma membrane | 70.46 | 70.76 |
CDX84628 | Canola | cytosol, endoplasmic reticulum, plastid | 70.04 | 70.04 |
CDX79577 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 69.62 | 69.62 |
CDY43655 | Canola | cytosol, plasma membrane, plastid | 68.35 | 68.35 |
CDY43657 | Canola | cytosol, plasma membrane, plastid | 68.35 | 68.35 |
AT2G34770.1 | Thale cress | cytosol | 67.93 | 67.93 |
Bra005394.1-P | Field mustard | plasma membrane | 66.24 | 66.24 |
CDY46240 | Canola | plasma membrane | 66.24 | 65.42 |
GSMUA_Achr2P10740_001 | Banana | cytosol | 65.4 | 65.4 |
KRH11817 | Soybean | cytosol, golgi, plasma membrane | 71.31 | 65.25 |
CDY15865 | Canola | plasma membrane | 65.82 | 65.0 |
Solyc02g022890.1.1 | Tomato | extracellular | 18.57 | 63.77 |
KRH42277 | Soybean | endoplasmic reticulum, plasma membrane | 63.71 | 63.18 |
CDX84282 | Canola | cytosol, endoplasmic reticulum, peroxisome | 65.82 | 63.16 |
KRH58400 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 62.87 | 62.34 |
GSMUA_Achr2P10760_001 | Banana | cytosol | 19.41 | 61.33 |
HORVU5Hr1G100890.11 | Barley | plastid | 89.87 | 60.17 |
CDY31640 | Canola | cytosol, golgi, plasma membrane | 55.27 | 59.82 |
VIT_10s0003g05380.t01 | Wine grape | plastid | 71.73 | 57.63 |
PGSC0003DMT400019648 | Potato | plasma membrane | 60.34 | 57.43 |
GSMUA_Achr11P... | Banana | extracellular | 15.19 | 54.55 |
Protein Annotations
EnsemblPlants:TraesCS5B01G418800.1 | EnsemblPlantsGene:TraesCS5B01G418800 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016491 |
GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR12863 | PANTHER:PTHR12863:SF2 | PFAM:PF04116 | TMHMM:TMhelix |
MapMan:5.4.10 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:594906963..594908460
Molecular Weight (calculated)
27313.3 Da
IEP (calculated)
8.868
GRAVY (calculated)
0.130
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKEFTVDL NKPLVLQVGH LEEHYQEWVH QPVVSKEGPR FFANDTMEFL TRTKWWAVPV IWLPVVCWLF AKSVRMGHTI QEVILMALFG VFVWTLIEYS
101: LHRFLFHIET RSYWSNTAHY LIHGCHHKHP MDSLRLVFPP AGAAIICVPF WNVVAFFASP STTPALFAGG LLGYVMYDCT HYYLHHGQPS RDPAKHLKRY
201: HLGHHFRIQD KGFGITSSLW DAVFGTLPSS KIAAKLS
101: LHRFLFHIET RSYWSNTAHY LIHGCHHKHP MDSLRLVFPP AGAAIICVPF WNVVAFFASP STTPALFAGG LLGYVMYDCT HYYLHHGQPS RDPAKHLKRY
201: HLGHHFRIQD KGFGITSSLW DAVFGTLPSS KIAAKLS
001: MVAERYTVDL NKPLVFQVGH LGEEYQEWIH QPIVCVEGPR FFESDFWEFL TRTVWWAIPT IWLPVVCYVL SISASKGLTF PQIGLIVAFG VLTWTLLEYT
101: LHRFLFHIQT KSYWANTAHY LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLLATP ATAPAILGGI LFGYVMYDIT HYYLHHGQPK EPTFKHLKKY
201: HLNHHFRIQD KGYGITSSLW DKVFGTLPGI KAAAKKS
101: LHRFLFHIQT KSYWANTAHY LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLLATP ATAPAILGGI LFGYVMYDIT HYYLHHGQPK EPTFKHLKKY
201: HLNHHFRIQD KGYGITSSLW DKVFGTLPGI KAAAKKS
Arabidopsis Description
FAH2Dihydroceramide fatty acyl 2-hydroxylase FAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.