Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 2
- extracellular 3
- peroxisome 1
- endoplasmic reticulum 2
- vacuole 2
- mitochondrion 1
- unclear 1
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P19410_001 | |
| GSMUA_Achr6P06700_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34770.1 | GSMUA_Achr3P19410_001 | AT2G32720.1 | 19054355 |
| AT2G34770.1 | GSMUA_Achr6P06700_001 | AT2G32720.1 | 19054355 |
| AT2G34770.1 | GSMUA_AchrUn_... | AT2G32720.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | extracellular | 30.67 | 34.85 |
| Solyc02g070050.2.1 | Tomato | extracellular | 57.33 | 26.71 |
| GSMUA_Achr2P10740_001 | Banana | cytosol | 84.0 | 26.58 |
| GSMUA_Achr11P... | Banana | cytosol | 70.67 | 22.36 |
| Zm00001d034319_P001 | Maize | cytosol | 68.0 | 21.52 |
| GSMUA_Achr8P14090_001 | Banana | cytosol | 68.0 | 21.52 |
| TraesCS5A01G019200.1 | Wheat | cytosol | 64.0 | 20.25 |
| HORVU0Hr1G009740.7 | Barley | cytosol | 64.0 | 20.25 |
| Os12t0628400-01 | Rice | cytosol | 64.0 | 20.17 |
| TraesCS5D01G424200.1 | Wheat | cytosol | 62.67 | 19.83 |
| EES16419 | Sorghum | endoplasmic reticulum | 62.67 | 19.83 |
| TraesCS5D01G024600.1 | Wheat | cytosol | 62.67 | 19.83 |
| TraesCS5B01G418800.1 | Wheat | cytosol | 61.33 | 19.41 |
| EER93353 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 61.33 | 19.41 |
| TraesCS5B01G016700.1 | Wheat | cytosol | 61.33 | 19.33 |
| KRH36837 | Soybean | endoplasmic reticulum, plasma membrane | 57.33 | 18.22 |
| PGSC0003DMT400054396 | Potato | cytosol | 57.33 | 18.22 |
| CDY43655 | Canola | cytosol, plasma membrane, plastid | 56.0 | 17.72 |
| CDY43657 | Canola | cytosol, plasma membrane, plastid | 56.0 | 17.72 |
| Zm00001d031149_P001 | Maize | cytosol, endoplasmic reticulum, plasma membrane | 62.67 | 17.6 |
| KRH42277 | Soybean | endoplasmic reticulum, plasma membrane | 56.0 | 17.57 |
| KRH58400 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 56.0 | 17.57 |
| TraesCS5A01G416500.2 | Wheat | endoplasmic reticulum, plasma membrane | 61.33 | 17.56 |
| CDY31640 | Canola | cytosol, golgi, plasma membrane | 50.67 | 17.35 |
| CDX84628 | Canola | cytosol, endoplasmic reticulum, plastid | 54.67 | 17.3 |
| CDX79577 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 54.67 | 17.3 |
| AT2G34770.1 | Thale cress | cytosol | 54.67 | 17.3 |
| Bra005394.1-P | Field mustard | plasma membrane | 53.33 | 16.88 |
| KRH11817 | Soybean | cytosol, golgi, plasma membrane | 57.33 | 16.6 |
| CDY15865 | Canola | plasma membrane | 52.0 | 16.25 |
| CDY46240 | Canola | plasma membrane | 50.67 | 15.83 |
| CDX84282 | Canola | cytosol, endoplasmic reticulum, peroxisome | 49.33 | 14.98 |
| VIT_10s0003g05380.t01 | Wine grape | plastid | 53.33 | 13.56 |
| HORVU5Hr1G100890.11 | Barley | plastid | 60.0 | 12.71 |
| PGSC0003DMT400019648 | Potato | plasma membrane | 25.33 | 7.63 |
| Solyc02g022890.1.1 | Tomato | extracellular | 2.67 | 2.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P10760_001 | EnsemblPlants:GSMUA_Achr2T10760_001 | EnsemblPlantsGene:GSMUA_Achr2G10760_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005506 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 |
| GO:GO:0016491 | GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR12863 | PANTHER:PTHR12863:SF2 | PFAM:PF04116 |
| UniParc:UPI00029555F5 | UniProt:M0S6W7 | MapMan:5.4.10 | : | : | : |
Description
fatty acid hydroxylase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G10760_001]
Coordinates
chr2:+:13759314..13759615
Molecular Weight (calculated)
8720.6 Da
IEP (calculated)
9.338
GRAVY (calculated)
-0.297
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MLCLEVACWG TFVIYDCTHC YLHHGHPSKH PAKHLKRYHL NHHFKVQNKV FGITSSLWDI IFGTLPPAKT SHQKN
001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
Arabidopsis Description
FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.