Factsheet for TraesCS5D01G024600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G524000.2
TraesCS3D01G529500.1
TraesCS5A01G138900.1
TraesCS5B01G138200.1
TraesCS5D01G152500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34770.1	TraesCS3A01G524000.2	AT2G32720.1	19054355
AT2G34770.1	TraesCS3D01G529500.1	AT2G32720.1	19054355
AT2G34770.1	TraesCS5A01G138900.1	AT2G32720.1	19054355
AT2G34770.1	TraesCS5B01G138200.1	AT2G32720.1	19054355
AT2G34770.1	TraesCS5D01G152500.1	AT2G32720.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G019200.1	Wheat	cytosol	98.73	98.73
HORVU0Hr1G009740.7	Barley	cytosol	98.73	98.73
TraesCS5B01G016700.1	Wheat	cytosol	98.31	97.9
EES16419	Sorghum	endoplasmic reticulum	86.5	86.5
Os12t0628400-01	Rice	cytosol	83.97	83.61
GSMUA_Achr8P14090_001	Banana	cytosol	79.32	79.32
GSMUA_Achr11P...	Banana	cytosol	79.32	79.32
Zm00001d031149_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	86.08	76.4
TraesCS5D01G424200.1	Wheat	cytosol	75.53	75.53
PGSC0003DMT400054396	Potato	cytosol	75.11	75.42
Solyc02g070050.2.1	Tomato	extracellular	51.05	75.16
KRH36837	Soybean	endoplasmic reticulum, plasma membrane	71.73	72.03
CDY43657	Canola	cytosol, plasma membrane, plastid	71.73	71.73
CDY43655	Canola	cytosol, plasma membrane, plastid	71.73	71.73
AT2G34770.1	Thale cress	cytosol	71.73	71.73
CDX84628	Canola	cytosol, endoplasmic reticulum, plastid	70.89	70.89
CDX79577	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.46	70.46
Bra005394.1-P	Field mustard	plasma membrane	67.93	67.93
GSMUA_Achr2P10740_001	Banana	cytosol	67.09	67.09
CDY46240	Canola	plasma membrane	67.93	67.08
CDY15865	Canola	plasma membrane	67.93	67.08
KRH11817	Soybean	cytosol, golgi, plasma membrane	73.0	66.8
KRH58400	Soybean	cytosol, endoplasmic reticulum, plasma membrane	67.09	66.53
KRH42277	Soybean	endoplasmic reticulum, plasma membrane	67.09	66.53
CDX84282	Canola	cytosol, endoplasmic reticulum, peroxisome	68.35	65.59
Solyc02g022890.1.1	Tomato	extracellular	18.99	65.22
GSMUA_Achr2P10760_001	Banana	cytosol	19.83	62.67
PGSC0003DMT400019648	Potato	plasma membrane	64.98	61.85
CDY31640	Canola	cytosol, golgi, plasma membrane	55.7	60.27
VIT_10s0003g05380.t01	Wine grape	plastid	71.31	57.29
GSMUA_Achr11P...	Banana	extracellular	14.77	53.03

Protein Annotations

EnsemblPlants:TraesCS5D01G024600.1	EnsemblPlantsGene:TraesCS5D01G024600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0016491
GO:GO:0055114	InterPro:Fatty_acid_hydroxylase	PANTHER:PTHR12863	PANTHER:PTHR12863:SF2	PFAM:PF04116	SEG:seg
TMHMM:TMhelix	MapMan:5.4.10	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:21462271..21466023

Molecular Weight (calculated)

27320.0 Da

IEP (calculated)

8.002

GRAVY (calculated)

0.045

Length

237 amino acids

Sequence
(BLAST)

001: MVAQAFTVDL DKPLVFQVGH LEEQYQDWVH QPIVSKEGPR FFANDVLEFL TRTKWWAVPL IWLPVVCWCL NTSIQMGHTV PEVALMVVAG IFIWTLVEYV
101: LHRYLFHIDT KSYWTNTAHY LLHGCHHKHP MDGLRLVFPP TAAAILCYPF WNFVKLFTTT TTTPGVFGGG LLGYVIYDCT HYYLHHAQPS SDPAKYLKKY
201: HLNHHFRIQN KGFGITSTLW DHVFGTLPST KTADKSS

Best Arabidopsis Sequence Match ( AT2G34770.1 )
(BLAST)

001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ

Arabidopsis Description

FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.