CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 3
golgi 2
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013479.1-P	Field mustard	cytosol	100.0	100.0
CDX82786	Canola	cytosol	99.58	99.58
AT4G20870.2	Thale cress	cytosol	94.94	94.94
PGSC0003DMT400054396	Potato	cytosol	75.53	75.85
Solyc02g070050.2.1	Tomato	extracellular	49.37	72.67
CDX79577	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.04	70.04
CDX84628	Canola	cytosol, endoplasmic reticulum, plastid	70.04	70.04
CDY46240	Canola	plasma membrane	70.46	69.58
CDY43655	Canola	cytosol, plasma membrane, plastid	69.2	69.2
CDY43657	Canola	cytosol, plasma membrane, plastid	69.2	69.2
CDY15865	Canola	plasma membrane	69.62	68.75
CDX84282	Canola	cytosol, endoplasmic reticulum, peroxisome	66.24	63.56
Solyc02g022890.1.1	Tomato	extracellular	18.14	62.32
PGSC0003DMT400019648	Potato	plasma membrane	64.56	61.45
CDY31640	Canola	cytosol, golgi, plasma membrane	53.16	57.53
CDY37569	Canola	cytosol	21.52	48.57

Protein Annotations

EnsemblPlants:CDX79011	EnsemblPlantsGene:GSBRNA2T00131539001	GO:A0A078CPA3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0016491	GO:GO:0055114	InterPro:Fatty_acid_hydroxylase	PANTHER:PTHR12863	PANTHER:PTHR12863:SF7	PFAM:PF04116
ProteinID:CDX79011	ProteinID:CDX79011.1	TMHMM:TMhelix	UniParc:UPI0002546BD4	MapMan:5.4.10	:

Description

BnaA01g10780D

Coordinates

chrLK031816:-:1348230..1350469

Molecular Weight (calculated)

27469.6 Da

IEP (calculated)

9.238

GRAVY (calculated)

0.091

Length

237 amino acids

Sequence
(BLAST)

001: MVAERFTVDL DKPLVFQVGH LGEEYQEWIH QPIVCVEGPR FFQSDFWEFL TRTVWWAIPT IWLPVVCYVL SISARKGLTF PQIGLIVAFG VLTWTLLEYT
101: LHRFLFHIET KSYWANTAHY LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLIATP ATAPAMLGGI LFGYVMYDVT HYYLHHGQPK EPTFKHLKKY
201: HLNHHFRIQD KGYGITSSLW DRVFGTLPGT KAAQKKL

Best Arabidopsis Sequence Match ( AT4G20870.2 )
(BLAST)

001: MVAERYTVDL NKPLVFQVGH LGEEYQEWIH QPIVCVEGPR FFESDFWEFL TRTVWWAIPT IWLPVVCYVL SISASKGLTF PQIGLIVAFG VLTWTLLEYT
101: LHRFLFHIQT KSYWANTAHY LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLLATP ATAPAILGGI LFGYVMYDIT HYYLHHGQPK EPTFKHLKKY
201: HLNHHFRIQD KGYGITSSLW DKVFGTLPGI KAAAKKS

Arabidopsis Description

FAH2Dihydroceramide fatty acyl 2-hydroxylase FAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.