Factsheet for Bra021809.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005394.1-P	cytosol, nucleus
Bra017502.1-P	cytosol
Bra022106.1-P	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	Bra005394.1-P	AT2G34770.1	19054355
AT2G32720.1	Bra005394.1-P	AT2G34770.1	22635113
AT2G32720.1	Bra005394.1-P	AT2G34770.1	22635113
AT2G32720.1	Bra017502.1-P	AT5G47120.1	19054355
AT2G32720.1	Bra022106.1-P	AT5G47120.1	19054355
AT2G32720.1	Bra017502.1-P	AT5G47120.1	19054355
AT2G32720.1	Bra022106.1-P	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19161	Canola	cytosol	100.0	100.0
CDY23792	Canola	cytosol	99.25	99.25
Bra005564.1-P	Field mustard	cytosol	94.78	94.78
AT2G32720.1	Thale cress	cytosol	94.78	94.78
Bra022898.1-P	Field mustard	cytosol	94.03	94.03
GSMUA_Achr3P19410_001	Banana	cytosol	76.87	76.87
Os01t0971500-01	Rice	cytosol, plasma membrane	76.87	76.3
EES02143	Sorghum	cytosol	75.37	74.81
TraesCS5D01G152500.1	Wheat	golgi	73.88	73.88
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	73.88	73.88
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	75.37	73.72
Os05t0108800-01	Rice	plasma membrane	75.37	73.72
EES17559	Sorghum	cytosol	73.13	73.68
GSMUA_Achr6P06700_001	Banana	cytosol	73.13	73.13
TraesCS5B01G138200.1	Wheat	cytosol, golgi	73.13	73.13
TraesCS5A01G138900.1	Wheat	cytosol, golgi	73.13	73.13
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	74.63	72.99
Bra022660.1-P	Field mustard	cytosol	65.67	65.67
Bra037461.1-P	Field mustard	cytosol	66.42	64.49
Bra036160.1-P	Field mustard	cytosol	65.67	62.86
HORVU3Hr1G114360.3	Barley	plasma membrane	76.12	58.96
Solyc12g098320.1.1	Tomato	cytosol	25.37	47.89
PGSC0003DMT400019916	Potato	cytosol	47.01	44.37
Bra039268.1-P	Field mustard	cytosol	43.28	43.28
Bra029062.1-P	Field mustard	nucleus	37.31	42.37
Bra004518.1-P	Field mustard	cytosol	41.04	41.04
Bra024721.1-P	Field mustard	cytosol	41.04	40.74
GSMUA_AchrUn_...	Banana	mitochondrion	68.66	37.55
Bra031489.1-P	Field mustard	extracellular, golgi, vacuole	24.63	27.27
Bra027144.1-P	Field mustard	nucleus	26.12	17.41

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra021809	EnsemblPlants:Bra021809.1	EnsemblPlants:Bra021809.1-P	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	UniProt:M4DZ62
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF69
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00025450FE	SEG:seg	:

Description

AT2G32720 (E=6e-062) B5 #4, ATCB5-B, CB5-B | CB5-B (CYTOCHROME B5 ISOFORM B); heme binding

Coordinates

chrA04:-:14636100..14637504

Molecular Weight (calculated)

15069.8 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.392

Length

134 amino acids

Sequence
(BLAST)

001: MGEEAKIFTL SEVSEHNHAH DCWIVINAKV YNVTKFLEDH PGGDEVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKTK YTPPKQPHYN
101: QDKTSEFIIK ILQFLVPIAI LGLAVGIRIY TKSG

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.