Factsheet for Bra039268.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017502.1-P
Bra022106.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46650.1	Bra017502.1-P	AT5G47120.1	19054355
AT2G46650.1	Bra022106.1-P	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61721	Canola	cytosol	99.25	99.25
CDY27310	Canola	cytosol	99.25	99.25
Bra004518.1-P	Field mustard	cytosol	94.03	94.03
AT2G46650.1	Thale cress	cytosol	82.09	83.33
KRG97223	Soybean	endoplasmic reticulum	51.49	48.94
Bra022660.1-P	Field mustard	cytosol	47.76	47.76
Bra022898.1-P	Field mustard	cytosol	46.27	46.27
KRH68944	Soybean	cytosol	48.51	46.1
Bra005564.1-P	Field mustard	cytosol	45.52	45.52
Bra036160.1-P	Field mustard	cytosol	47.01	45.0
Os02t0649800-01	Rice	plasma membrane	45.52	44.2
TraesCS6A01G240700.1	Wheat	cytosol, golgi, mitochondrion	46.27	43.97
Bra037461.1-P	Field mustard	cytosol	44.78	43.48
Bra021809.1-P	Field mustard	cytosol	43.28	43.28
TraesCS6D01G222900.1	Wheat	cytosol	45.52	42.96
TraesCS6B01G284000.1	Wheat	cytosol	45.52	42.96
KRH47845	Soybean	endoplasmic reticulum	45.52	42.96
KRH06410	Soybean	cytosol	46.27	42.47
Zm00001d017425_P001	Maize	cytosol	42.54	41.01
Bra024721.1-P	Field mustard	cytosol	38.81	38.52
Solyc06g053170.2.1	Tomato	cytosol, plastid	11.19	38.46
Bra029062.1-P	Field mustard	nucleus	32.84	37.29
HORVU6Hr1G061420.4	Barley	cytosol	44.03	36.2
OQU85747	Sorghum	mitochondrion	41.79	26.17
Bra031489.1-P	Field mustard	extracellular, golgi, vacuole	22.39	24.79
Bra027144.1-P	Field mustard	nucleus	20.9	13.93

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra039268	EnsemblPlants:Bra039268.1	EnsemblPlants:Bra039268.1-P	ncoils:Coil
InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400
UniProt:M4FDU7	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359
PANTHER:PTHR19359:SF43	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI000254463E	:

Description

AT2G46650 (E=4e-063) B5 #1, ATCB5-C, CB5-C | CB5-C (CYTOCHROME B5 ISOFORM C); heme binding

Coordinates

chrA04:+:18804748..18805350

Molecular Weight (calculated)

15138.0 Da

IEP (calculated)

6.347

GRAVY (calculated)

-0.347

Length

134 amino acids

Sequence
(BLAST)

001: MAKLISFHDV AKHKCKNDCW ILIHGKVYDV SSFIDEHPGG DNVLLAVTGK DASTDFDDVN HSNEAKETMK KYYIGDVDKS TVPVTAKYIP PWEKESTAET
101: TKDESGNKML VYFVPLLILG VAFFLRFYNN KQTT

Best Arabidopsis Sequence Match ( AT2G46650.1 )
(BLAST)

001: MANLISFHDV AKHKCKNDCW ILIHGKVYDI STFMDEHPGG DNVLLAVTGK DASIDFEDVN HSKDAKELMK KYCIGDVDQS TVPVTQQYIP PWEKESTAAE
101: TTKEESGKKL LIYLIPLLIL GVAFALRFYN NK

Arabidopsis Description

CYTB5-CCytochrome B5 isoform C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.