Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d015091_P003 | |
| Zm00001d045618_P001 | |
| Zm00001d053952_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46650.1 | Zm00001d015091_P003 | AT5G47120.1 | 19054355 |
| AT2G46650.1 | Zm00001d045618_P001 | AT5G47120.1 | 19054355 |
| AT2G46650.1 | Zm00001d053952_P001 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G240700.1 | Wheat | cytosol, golgi, mitochondrion | 74.1 | 73.05 |
| TraesCS6B01G284000.1 | Wheat | cytosol | 73.38 | 71.83 |
| TraesCS6D01G222900.1 | Wheat | cytosol | 72.66 | 71.13 |
| Os02t0649800-01 | Rice | plasma membrane | 69.78 | 70.29 |
| OQU85747 | Sorghum | mitochondrion | 86.33 | 56.07 |
| HORVU6Hr1G061420.4 | Barley | cytosol | 65.47 | 55.83 |
| KRG97223 | Soybean | endoplasmic reticulum | 51.08 | 50.35 |
| KRH68944 | Soybean | cytosol | 49.64 | 48.94 |
| AT2G46650.1 | Thale cress | cytosol | 46.04 | 48.48 |
| Zm00001d041963_P001 | Maize | plasma membrane | 45.32 | 46.67 |
| Zm00001d011786_P001 | Maize | plasma membrane | 45.32 | 46.67 |
| Solyc06g053170.2.1 | Tomato | cytosol, plastid | 12.95 | 46.15 |
| KRH47845 | Soybean | endoplasmic reticulum | 46.04 | 45.07 |
| KRH06410 | Soybean | cytosol | 46.76 | 44.52 |
| Zm00001d011081_P001 | Maize | plasma membrane, plastid | 42.45 | 44.36 |
| CDY41545 | Canola | cytosol | 41.73 | 43.28 |
| CDX80035 | Canola | cytosol | 41.73 | 43.28 |
| Bra004518.1-P | Field mustard | cytosol | 41.73 | 43.28 |
| CDY61721 | Canola | cytosol | 41.01 | 42.54 |
| CDY27310 | Canola | cytosol | 41.01 | 42.54 |
| Bra039268.1-P | Field mustard | cytosol | 41.01 | 42.54 |
| Zm00001d032442_P002 | Maize | cytosol | 41.73 | 41.73 |
| Zm00001d013839_P001 | Maize | plasma membrane | 53.24 | 40.66 |
| Zm00001d034048_P003 | Maize | cytosol | 37.41 | 37.14 |
| Zm00001d023978_P001 | Maize | cytosol | 30.22 | 32.06 |
| Zm00001d013257_P002 | Maize | plastid | 34.53 | 32.0 |
| Zm00001d032266_P001 | Maize | endoplasmic reticulum, extracellular | 25.9 | 30.51 |
| Zm00001d035685_P001 | Maize | mitochondrion | 29.5 | 26.45 |
Protein Annotations
| EntrezGene:103627487 | MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | ProteinID:AQK73150.1 | UniProt:B6SM43 | InterPro:Cyt_B5-like_heme/steroid-bd |
| InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | EMBL:EU953808 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 | InterPro:IPR001199 | InterPro:IPR036400 |
| PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF30 |
| SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | UniParc:UPI000182B844 | EnsemblPlantsGene:Zm00001d017425 | EnsemblPlants:Zm00001d017425_P001 |
| EnsemblPlants:Zm00001d017425_T001 | SEG:seg | : | : | : | : |
Description
Cytochrome b5
Coordinates
chr5:-:195722803..195723646
Molecular Weight (calculated)
14846.7 Da
IEP (calculated)
5.207
GRAVY (calculated)
-0.054
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGKVYSFE EVRKHSDRKD CWLIIAGKVY DVTPFMEEHP GGDEVLLASV GKDATADFED IGHSASAKEL MPQYCIGKVD AATFPAKPAC VVTKDDARSS
101: EKAATSAGAW ATLLQLAAPV LLLALAFALQ QNYARAKAE
101: EKAATSAGAW ATLLQLAAPV LLLALAFALQ QNYARAKAE
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
Arabidopsis Description
CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.