CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY25984
CDY28973
CDY40569
CDY43441

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46650.1	CDY25984	AT5G47120.1	19054355
AT2G46650.1	CDY28973	AT5G47120.1	19054355
AT2G46650.1	CDY40569	AT5G47120.1	19054355
AT2G46650.1	CDY43441	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004518.1-P	Field mustard	cytosol	100.0	100.0
CDX80035	Canola	cytosol	99.25	99.25
CDY27310	Canola	cytosol	94.78	94.78
CDY61721	Canola	cytosol	94.78	94.78
AT2G46650.1	Thale cress	cytosol	85.82	87.12
KRG97223	Soybean	endoplasmic reticulum	50.75	48.23
CDY47080	Canola	cytosol	47.01	47.01
CDX96233	Canola	cytosol	45.52	45.52
CDY28830	Canola	cytosol	45.52	45.52
KRH68944	Soybean	cytosol	47.76	45.39
CDY59638	Canola	cytosol	44.03	44.03
Os02t0649800-01	Rice	plasma membrane	44.78	43.48
TraesCS6A01G240700.1	Wheat	cytosol, golgi, mitochondrion	45.52	43.26
CDX84725	Canola	cytosol	42.54	42.54
CDX79471	Canola	cytosol	42.54	42.54
TraesCS6D01G222900.1	Wheat	cytosol	44.78	42.25
TraesCS6B01G284000.1	Wheat	cytosol	44.78	42.25
CDY19937	Canola	cytosol	44.03	42.14
Zm00001d017425_P001	Maize	cytosol	43.28	41.73
CDY00045	Canola	cytosol	43.28	41.43
CDX85364	Canola	cytosol	42.54	41.3
CDX86279	Canola	cytosol	42.54	41.3
CDY23792	Canola	cytosol	41.04	41.04
CDY19161	Canola	cytosol	41.04	41.04
KRH47845	Soybean	endoplasmic reticulum	42.54	40.14
CDY14370	Canola	cytosol	46.27	39.74
KRH06410	Soybean	cytosol	43.28	39.73
CDX85016	Canola	cytosol	38.81	38.52
CDY12180	Canola	cytosol	44.03	37.82
CDY16153	Canola	cytosol	38.06	37.78
Solyc06g053170.2.1	Tomato	cytosol, plastid	10.45	35.9
CDY47078	Canola	nucleus	31.34	35.59
HORVU6Hr1G061420.4	Barley	cytosol	43.28	35.58
CDY20247	Canola	mitochondrion	46.27	32.63
OQU85747	Sorghum	mitochondrion	43.28	27.1
CDY46984	Canola	endoplasmic reticulum	22.39	22.73
CDY24550	Canola	extracellular, golgi, vacuole	20.15	22.31
CDY34133	Canola	endoplasmic reticulum, extracellular, golgi	20.15	22.13
CDY61511	Canola	endoplasmic reticulum, golgi	13.43	21.43
CDY44610	Canola	endoplasmic reticulum	13.43	21.43

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	GO:A0A078HSM1	UniProt:A0A078HSM1	EnsemblPlants:CDY41545	ProteinID:CDY41545
ProteinID:CDY41545.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00073174001
InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255
PANTHER:PTHR19359	PANTHER:PTHR19359:SF43	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00025473C0
SEG:seg	:	:	:	:	:

Description

BnaC04g00770DBnaC04g00770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSM1]

Coordinates

chrLK032500:+:51162..52154

Molecular Weight (calculated)

15071.9 Da

IEP (calculated)

5.991

GRAVY (calculated)

-0.304

Length

134 amino acids

Sequence
(BLAST)

001: MANLISFHDV AKHKCKNDCW ILIHGKVYDI SSFIDEHPGG DNVLLAVTGK DASTDFDDVN HSNEAKETMK KYCIGDVDKS TVPVTAKYIP PWEKESTAET
101: TKEETGNKML VYLIPLLILG VAFFLRFYNN KQTS

Best Arabidopsis Sequence Match ( AT2G46650.1 )
(BLAST)

001: MANLISFHDV AKHKCKNDCW ILIHGKVYDI STFMDEHPGG DNVLLAVTGK DASIDFEDVN HSKDAKELMK KYCIGDVDQS TVPVTQQYIP PWEKESTAAE
101: TTKEESGKKL LIYLIPLLIL GVAFALRFYN NK

Arabidopsis Description

CYTB5-CCytochrome B5 isoform C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.