Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029062.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY47080 | Canola | cytosol | 56.78 | 50.0 |
| CDY28830 | Canola | cytosol | 53.39 | 47.01 |
| CDX96233 | Canola | cytosol | 53.39 | 47.01 |
| PGSC0003DMT400000362 | Potato | cytosol | 44.07 | 39.39 |
| CDY14370 | Canola | cytosol | 51.69 | 39.1 |
| CDX79471 | Canola | cytosol | 44.07 | 38.81 |
| CDY59638 | Canola | cytosol | 44.07 | 38.81 |
| CDX84725 | Canola | cytosol | 44.07 | 38.81 |
| CDY16153 | Canola | cytosol | 43.22 | 37.78 |
| CDX85016 | Canola | cytosol | 43.22 | 37.78 |
| CDY19161 | Canola | cytosol | 42.37 | 37.31 |
| CDY23792 | Canola | cytosol | 42.37 | 37.31 |
| CDX86279 | Canola | cytosol | 43.22 | 36.96 |
| CDX85364 | Canola | cytosol | 43.22 | 36.96 |
| CDY00045 | Canola | cytosol | 42.37 | 35.71 |
| CDY19937 | Canola | cytosol | 42.37 | 35.71 |
| CDY12180 | Canola | cytosol | 44.07 | 33.33 |
| CDY27310 | Canola | cytosol | 37.29 | 32.84 |
| CDY61721 | Canola | cytosol | 37.29 | 32.84 |
| CDY20247 | Canola | mitochondrion | 51.69 | 32.11 |
| CDX80035 | Canola | cytosol | 36.44 | 32.09 |
| CDY41545 | Canola | cytosol | 35.59 | 31.34 |
| CDY44610 | Canola | endoplasmic reticulum | 20.34 | 28.57 |
| CDY61511 | Canola | endoplasmic reticulum, golgi | 20.34 | 28.57 |
| CDY34133 | Canola | endoplasmic reticulum, extracellular, golgi | 26.27 | 25.41 |
| CDY24550 | Canola | extracellular, golgi, vacuole | 25.42 | 24.79 |
| CDY46984 | Canola | endoplasmic reticulum | 27.12 | 24.24 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | GO:A0A078ID04 | UniProt:A0A078ID04 | EnsemblPlants:CDY47078 | ProteinID:CDY47078 |
| ProteinID:CDY47078.1 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0020037 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00086700001 | InterPro:IPR001199 | InterPro:IPR036400 | PFAM:PF00173 |
| PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF22 | SMART:SM01117 |
| SUPFAM:SSF55856 | UniParc:UPI000253FF76 | : | : | : | : |
Description
BnaA03g12200DBnaA03g12200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ID04]
Coordinates
chrLK032696:+:158894..159923
Molecular Weight (calculated)
13522.8 Da
IEP (calculated)
7.196
GRAVY (calculated)
-0.727
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDKKVFSS DEVSQHNKRD DCWLIISGKV YDVTHFMDEH PGGDEVFLSS AGKDATFDFE DVGHSEDARE LMKDRRSTTL VRSIRLFQQQ GHTSHLCKPL
101: KTKTRHQNSL SRFCSSLF
101: KTKTRHQNSL SRFCSSLF
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
Arabidopsis Description
CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.