Factsheet for Bra029062.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47078	Canola	nucleus	100.0	100.0
Bra022660.1-P	Field mustard	cytosol	53.39	47.01
Bra005564.1-P	Field mustard	cytosol	44.92	39.55
Bra022898.1-P	Field mustard	cytosol	44.92	39.55
PGSC0003DMT400000362	Potato	cytosol	44.07	39.39
Bra024721.1-P	Field mustard	cytosol	43.22	37.78
Bra021809.1-P	Field mustard	cytosol	42.37	37.31
Bra037461.1-P	Field mustard	cytosol	43.22	36.96
Bra036160.1-P	Field mustard	cytosol	41.53	35.0
Bra039268.1-P	Field mustard	cytosol	37.29	32.84
Bra004518.1-P	Field mustard	cytosol	35.59	31.34
Bra031489.1-P	Field mustard	extracellular, golgi, vacuole	25.42	24.79
Bra027144.1-P	Field mustard	nucleus	25.42	14.93

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra029062	EnsemblPlants:Bra029062.1	EnsemblPlants:Bra029062.1-P	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0020037	GO:GO:0046872
InterPro:IPR001199	InterPro:IPR036400	UniProt:M4EJU6	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191
PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF22	SMART:SM01117	SUPFAM:SSF55856	UniParc:UPI000253FF76

Description

AT5G53560 (E=2e-028) ATB5-A, B5 #2, ATCB5-E, CB5-E | CB5-E (CYTOCHROME B5 ISOFORM E); heme binding

Coordinates

chrA03:-:6123228..6124069

Molecular Weight (calculated)

13522.8 Da

IEP (calculated)

7.196

GRAVY (calculated)

-0.727

Length

118 amino acids

Sequence
(BLAST)

001: MASDKKVFSS DEVSQHNKRD DCWLIISGKV YDVTHFMDEH PGGDEVFLSS AGKDATFDFE DVGHSEDARE LMKDRRSTTL VRSIRLFQQQ GHTSHLCKPL
101: KTKTRHQNSL SRFCSSLF

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.