Factsheet for Bra037461.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017502.1-P
Bra022106.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48810.1	Bra017502.1-P	AT5G47120.1	19054355
AT5G48810.1	Bra022106.1-P	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86279	Canola	cytosol	99.28	99.28
CDX85364	Canola	cytosol	97.1	97.1
Bra036160.1-P	Field mustard	cytosol	90.58	89.29
AT5G48810.1	Thale cress	cytosol	85.51	84.29
PGSC0003DMT400045531	Potato	cytosol	71.01	73.68
Solyc09g061230.2.1	Tomato	cytosol	70.29	72.93
PGSC0003DMT400003091	Potato	cytosol	69.57	71.11
Solyc06g007930.2.1	Tomato	cytosol, endoplasmic reticulum, plastid, unclear	68.84	70.37
GSMUA_Achr3P19410_001	Banana	cytosol	67.39	69.4
PGSC0003DMT400051945	Potato	cytosol	65.94	68.94
TraesCS5D01G152500.1	Wheat	golgi	66.67	68.66
Bra005564.1-P	Field mustard	cytosol	66.67	68.66
Solyc06g083440.2.1	Tomato	cytosol	65.94	68.42
TraesCS5A01G138900.1	Wheat	cytosol, golgi	65.94	67.91
Os05t0108800-01	Rice	plasma membrane	67.39	67.88
KRG99574	Soybean	cytosol, endoplasmic reticulum	65.94	67.41
TraesCS5B01G138200.1	Wheat	cytosol, golgi	65.22	67.16
Bra022898.1-P	Field mustard	cytosol	65.22	67.16
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	65.22	67.16
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	66.67	67.15
VIT_07s0005g06290.t01	Wine grape	cytosol	64.49	66.92
EES17559	Sorghum	cytosol	64.49	66.92
KRH66053	Soybean	endoplasmic reticulum	65.22	66.67
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	65.94	66.42
Bra021809.1-P	Field mustard	cytosol	64.49	66.42
Os01t0971500-01	Rice	cytosol, plasma membrane	64.49	65.93
EES02143	Sorghum	cytosol	64.49	65.93
Bra022660.1-P	Field mustard	cytosol	62.32	64.18
GSMUA_Achr6P06700_001	Banana	cytosol	61.59	63.43
HORVU3Hr1G114360.3	Barley	plasma membrane	65.94	52.6
Bra039268.1-P	Field mustard	cytosol	43.48	44.78
Bra029062.1-P	Field mustard	nucleus	36.96	43.22
Bra004518.1-P	Field mustard	cytosol	40.58	41.79
Bra024721.1-P	Field mustard	cytosol	39.13	40.0
GSMUA_AchrUn_...	Banana	mitochondrion	56.52	31.84
Zm00001d035685_P001	Maize	mitochondrion	33.33	29.68
Bra031489.1-P	Field mustard	extracellular, golgi, vacuole	21.74	24.79
Bra027144.1-P	Field mustard	nucleus	19.57	13.43

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra037461	EnsemblPlants:Bra037461.1	EnsemblPlants:Bra037461.1-P	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	UniProt:M4F8P9
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF69
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI000253F985	SEG:seg	:

Description

AT5G48810 (E=3e-054) ATB5-B, B5 #3, ATCB5-D, CB5-D | CB5-D (CYTOCHROME B5 ISOFORM D); heme binding

Coordinates

chrA06:+:21326311..21327090

Molecular Weight (calculated)

14959.5 Da

IEP (calculated)

4.335

GRAVY (calculated)

-0.243

Length

138 amino acids

Sequence
(BLAST)

001: MGGDGKVFTL EEVSQHTSNQ DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DSATVPAKTK FVAPPSNQTQ
101: SNQNKSSDFL IKILQFLVPL LILGLALGIR SYTKTPSS

Best Arabidopsis Sequence Match ( AT5G48810.1 )
(BLAST)

001: MGGDGKVFTL SEVSQHSSAK DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTATVPVKAK FVPPTSTKAV
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS

Arabidopsis Description

CYTB5-DCytochrome B5 isoform D [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.