Factsheet for Bra022660.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra012567.1-P
Bra013361.1-P
Bra014481.1-P
Bra017502.1-P
Bra022106.1-P
Bra026434.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53560.1	Bra003423.1-P	AT3G60600.1	21798944
AT5G53560.1	Bra007547.1-P	AT3G60600.1	21798944
AT5G53560.1	Bra014481.1-P	AT3G60600.1	21798944
AT5G53560.1	Bra012567.1-P	AT4G19030.1	21798944
AT5G53560.1	Bra013361.1-P	AT4G19030.1	21798944
AT5G53560.1	Bra026434.1-P	AT4G26455.1	21798944
AT5G53560.1	Bra017502.1-P	AT5G47120.1	19054355
AT5G53560.1	Bra022106.1-P	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28830	Canola	cytosol	100.0	100.0
CDX96233	Canola	cytosol	100.0	100.0
AT5G53560.1	Thale cress	cytosol	92.54	92.54
CDY14370	Canola	cytosol	97.01	83.33
VIT_16s0098g01230.t01	Wine grape	cytosol	82.09	82.09
PGSC0003DMT400047688	Potato	cytosol	80.6	80.6
KRH64355	Soybean	endoplasmic reticulum	82.09	78.57
PGSC0003DMT400013956	Potato	cytosol	76.12	76.12
Os10t0518200-01	Rice	plasma membrane, plastid	55.22	71.15
EER91363	Sorghum	cytosol	70.9	70.9
TraesCS1D01G184800.1	Wheat	cytosol	69.4	69.4
TraesCS1A01G181500.1	Wheat	cytosol, golgi	68.66	68.66
CDY20247	Canola	mitochondrion	96.27	67.89
Bra022898.1-P	Field mustard	cytosol	66.42	66.42
Bra005564.1-P	Field mustard	cytosol	66.42	66.42
Bra021809.1-P	Field mustard	cytosol	65.67	65.67
Bra037461.1-P	Field mustard	cytosol	64.18	62.32
GSMUA_Achr1P04070_001	Banana	cytosol	61.19	61.65
Bra036160.1-P	Field mustard	cytosol	61.19	58.57
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	70.9	58.28
Solyc03g082600.2.1	Tomato	plastid	80.6	56.84
Zm00001d032442_P002	Maize	cytosol	58.96	56.83
KRH53581	Soybean	endoplasmic reticulum	82.09	56.41
GSMUA_Achr11P...	Banana	cytosol	53.73	54.55
Bra029062.1-P	Field mustard	nucleus	47.01	53.39
Zm00001d013839_P001	Maize	plasma membrane	70.9	52.2
GSMUA_Achr4P27140_001	Banana	cytosol	55.97	48.39
Bra039268.1-P	Field mustard	cytosol	47.76	47.76
HORVU1Hr1G047990.4	Barley	plastid	69.4	46.27
Bra004518.1-P	Field mustard	cytosol	45.52	45.52
Bra024721.1-P	Field mustard	cytosol	45.52	45.19
TraesCS1B01G199300.1	Wheat	cytosol	68.66	43.4
Bra031489.1-P	Field mustard	extracellular, golgi, vacuole	23.88	26.45
Bra027144.1-P	Field mustard	nucleus	20.9	13.93

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra022660	EnsemblPlants:Bra022660.1	EnsemblPlants:Bra022660.1-P	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005886
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	UniProt:M4E1L0	PFAM:PF00173	PRINTS:PR00363
ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF22	SMART:SM01117	SUPFAM:SSF55856
TMHMM:TMhelix	UniParc:UPI0001BA7AC6	:	:	:	:

Description

AT5G53560 (E=2e-069) ATB5-A, B5 #2, ATCB5-E, CB5-E | CB5-E (CYTOCHROME B5 ISOFORM E); heme binding

Coordinates

chrA02:-:8190486..8191181

Molecular Weight (calculated)

15045.9 Da

IEP (calculated)

4.764

GRAVY (calculated)

-0.348

Length

134 amino acids

Sequence
(BLAST)

001: MASDKKVLGF EEVSQHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMEKYYIGEI DSSSVPKTRT YVAPAQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRQY TKKE

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.