Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- vacuole 1
- endoplasmic reticulum 1
- mitochondrion 2
- extracellular 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53560.1 | GSMUA_Achr11P... | AT3G60600.1 | 21798944 |
| AT5G53560.1 | GSMUA_Achr11P... | AT3G60600.1 | 21798944 |
| AT5G53560.1 | GSMUA_Achr1P20280_001 | AT3G60600.1 | 21798944 |
| AT5G53560.1 | GSMUA_Achr5P20880_001 | AT3G60600.1 | 21798944 |
| AT5G53560.1 | GSMUA_Achr8P11120_001 | AT3G60600.1 | 21798944 |
| AT5G53560.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
| AT5G53560.1 | GSMUA_Achr10P... | AT4G26455.1 | 21798944 |
| AT5G53560.1 | GSMUA_Achr3P04120_001 | AT4G26455.1 | 21798944 |
| AT5G53560.1 | GSMUA_Achr4P01630_001 | AT4G26455.1 | 21798944 |
| AT5G53560.1 | GSMUA_Achr6P36970_001 | AT5G47120.1 | 19054355 |
| AT5G53560.1 | GSMUA_Achr7P07470_001 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013956 | Potato | cytosol | 61.96 | 75.37 |
| AT5G53560.1 | Thale cress | cytosol | 60.12 | 73.13 |
| GSMUA_Achr1P04070_001 | Banana | cytosol | 59.51 | 72.93 |
| KRH64355 | Soybean | endoplasmic reticulum | 61.96 | 72.14 |
| Os10t0518200-01 | Rice | plasma membrane, plastid | 46.01 | 72.12 |
| VIT_16s0098g01230.t01 | Wine grape | cytosol | 58.9 | 71.64 |
| CDY28830 | Canola | cytosol | 58.28 | 70.9 |
| CDX96233 | Canola | cytosol | 58.28 | 70.9 |
| PGSC0003DMT400047688 | Potato | cytosol | 58.28 | 70.9 |
| Bra022660.1-P | Field mustard | cytosol | 58.28 | 70.9 |
| EER91363 | Sorghum | cytosol | 57.67 | 70.15 |
| TraesCS1A01G181500.1 | Wheat | cytosol, golgi | 55.83 | 67.91 |
| TraesCS1D01G184800.1 | Wheat | cytosol | 55.21 | 67.16 |
| GSMUA_Achr6P06700_001 | Banana | cytosol | 52.15 | 63.43 |
| GSMUA_Achr3P19410_001 | Banana | cytosol | 50.31 | 61.19 |
| CDY14370 | Canola | cytosol | 58.28 | 60.9 |
| GSMUA_Achr11P... | Banana | cytosol | 46.01 | 56.82 |
| Zm00001d032442_P002 | Maize | cytosol | 47.24 | 55.4 |
| KRH53581 | Soybean | endoplasmic reticulum | 62.58 | 52.31 |
| Zm00001d013839_P001 | Maize | plasma membrane | 58.28 | 52.2 |
| Solyc03g082600.2.1 | Tomato | plastid | 60.12 | 51.58 |
| CDY20247 | Canola | mitochondrion | 59.51 | 51.05 |
| GSMUA_Achr4P27140_001 | Banana | cytosol | 45.4 | 47.74 |
| HORVU1Hr1G047990.4 | Barley | plastid | 55.21 | 44.78 |
| TraesCS1B01G199300.1 | Wheat | cytosol | 57.06 | 43.87 |
| GSMUA_Achr2P13570_001 | Banana | cytosol | 35.58 | 43.61 |
| GSMUA_Achr3P16820_001 | Banana | cytosol | 31.9 | 37.68 |
| GSMUA_Achr6P28600_001 | Banana | cytosol, golgi, peroxisome | 30.06 | 36.3 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 50.92 | 33.88 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus | 29.45 | 32.21 |
| GSMUA_Achr9P05320_001 | Banana | endoplasmic reticulum, plasma membrane | 21.47 | 23.97 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 |
| EnsemblPlantsGene:GSMUA_Achr4G30410_001 | EnsemblPlants:GSMUA_Achr4P30410_001 | EnsemblPlants:GSMUA_Achr4T30410_001 | InterPro:IPR001199 | InterPro:IPR036400 | UniProt:M0STF3 |
| PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF22 |
| SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | UniParc:UPI00029647BD | SEG:seg | : |
Description
Cytochrome b5 isoform 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30410_001]
Coordinates
chr4:-:28028433..28030935
Molecular Weight (calculated)
17986.5 Da
IEP (calculated)
5.566
GRAVY (calculated)
-0.060
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MINRLRGDGG VHSAAAAAIA DYSLGICIKE MADSKVYRFD EVSKHNVAKD CWLIISGKVY DVTPFLDEHP GGDEVLLAVT GKDATNDFED IGHSNSARDM
101: MAKYYIGQVD LSTVPTTRTY IPPQQASYNP DKTSEFVIRI LQFLVPIMIL GLAFAVRHFT KAD
101: MAKYYIGQVD LSTVPTTRTY IPPQQASYNP DKTSEFVIRI LQFLVPIMIL GLAFAVRHFT KAD
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
Arabidopsis Description
CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.