Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- peroxisome 2
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P16820_001 | Banana | cytosol | 77.78 | 76.09 |
| EES15848 | Sorghum | cytosol | 59.26 | 54.42 |
| TraesCS7B01G336600.1 | Wheat | cytosol | 57.78 | 52.35 |
| Zm00001d023978_P001 | Maize | cytosol | 50.37 | 51.91 |
| TraesCS7A01G437700.1 | Wheat | cytosol | 57.04 | 51.68 |
| Os12t0223300-01 | Rice | cytosol, peroxisome, plastid | 57.04 | 51.33 |
| GSMUA_Achr6P06700_001 | Banana | cytosol | 39.26 | 39.55 |
| GSMUA_Achr3P19410_001 | Banana | cytosol | 39.26 | 39.55 |
| HORVU7Hr1G100040.1 | Barley | plastid | 55.56 | 37.13 |
| GSMUA_Achr1P04070_001 | Banana | cytosol | 36.3 | 36.84 |
| TraesCS7D01G427500.1 | Wheat | mitochondrion, plastid | 56.3 | 34.08 |
| GSMUA_Achr2P13570_001 | Banana | cytosol | 33.33 | 33.83 |
| GSMUA_Achr11P... | Banana | cytosol | 31.11 | 31.82 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus | 34.07 | 30.87 |
| GSMUA_Achr4P30410_001 | Banana | cytosol, extracellular, mitochondrion | 36.3 | 30.06 |
| GSMUA_Achr4P27140_001 | Banana | cytosol | 27.41 | 23.87 |
| GSMUA_Achr9P05320_001 | Banana | endoplasmic reticulum, plasma membrane | 21.48 | 19.86 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 34.81 | 19.18 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 |
| EnsemblPlantsGene:GSMUA_Achr6G28600_001 | EnsemblPlants:GSMUA_Achr6P28600_001 | EnsemblPlants:GSMUA_Achr6T28600_001 | InterPro:IPR001199 | InterPro:IPR036400 | UniProt:M0TB05 |
| PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF39 |
| SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | UniParc:UPI0002964BE3 | : | : |
Description
Putative Cytochrome b5 [Source:GMGC_GENE;Acc:GSMUA_Achr6G28600_001]
Coordinates
chr6:+:28948651..28950801
Molecular Weight (calculated)
14936.5 Da
IEP (calculated)
5.449
GRAVY (calculated)
-0.153
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAFQTYSPS EISLHTTKKD CWLSIHGKVY DVTTFLEDHP GGEDVILHAS ASGDATQAFD DVGHSSTATS MMESYVIGTV EGYVSGIKPT SRHWLSKQEQ
101: PPPSYSFTDY LLPLLVLGIA FAAWYYLTFY SKAKA
101: PPPSYSFTDY LLPLLVLGIA FAAWYYLTFY SKAKA
001: MGGDGKVFTL SEVSQHSSAK DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTATVPVKAK FVPPTSTKAV
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS
Arabidopsis Description
CYTB5-DCytochrome B5 isoform D [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWT2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.