Factsheet for GSMUA_Achr4P27140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
plasma membrane 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P36970_001
GSMUA_Achr7P07470_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53560.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT5G53560.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT5G53560.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT5G53560.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT5G53560.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT5G53560.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT5G53560.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT5G53560.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT5G53560.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944
AT5G53560.1	GSMUA_Achr6P36970_001	AT5G47120.1	19054355
AT5G53560.1	GSMUA_Achr7P07470_001	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0518200-01	Rice	plasma membrane, plastid	39.35	58.65
VIT_16s0098g01230.t01	Wine grape	cytosol	49.68	57.46
Bra022660.1-P	Field mustard	cytosol	48.39	55.97
CDX96233	Canola	cytosol	48.39	55.97
CDY28830	Canola	cytosol	48.39	55.97
AT5G53560.1	Thale cress	cytosol	47.1	54.48
EER91363	Sorghum	cytosol	47.1	54.48
TraesCS1D01G184800.1	Wheat	cytosol	47.1	54.48
TraesCS1A01G181500.1	Wheat	cytosol, golgi	47.1	54.48
PGSC0003DMT400047688	Potato	cytosol	46.45	53.73
PGSC0003DMT400013956	Potato	cytosol	45.81	52.99
KRH64355	Soybean	endoplasmic reticulum	47.74	52.86
CDY14370	Canola	cytosol	49.68	49.36
GSMUA_Achr1P04070_001	Banana	cytosol	41.29	48.12
GSMUA_Achr3P19410_001	Banana	cytosol	40.65	47.01
GSMUA_Achr6P06700_001	Banana	cytosol	39.35	45.52
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	47.74	45.4
Zm00001d032442_P002	Maize	cytosol	40.0	44.6
CDY20247	Canola	mitochondrion	49.68	40.53
Zm00001d013839_P001	Maize	plasma membrane	46.45	39.56
Solyc03g082600.2.1	Tomato	plastid	48.39	39.47
GSMUA_Achr11P...	Banana	cytosol	32.9	38.64
KRH53581	Soybean	endoplasmic reticulum	47.74	37.95
HORVU1Hr1G047990.4	Barley	plastid	45.81	35.32
GSMUA_Achr2P13570_001	Banana	cytosol	29.68	34.59
TraesCS1B01G199300.1	Wheat	cytosol	47.1	34.43
GSMUA_Achr3P16820_001	Banana	cytosol	26.45	29.71
GSMUA_Achr6P28600_001	Banana	cytosol, golgi, peroxisome	23.87	27.41
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	24.52	25.5
GSMUA_AchrUn_...	Banana	mitochondrion	36.77	23.27
GSMUA_Achr9P05320_001	Banana	endoplasmic reticulum, plasma membrane	15.48	16.44

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr4G27140_001	EnsemblPlants:GSMUA_Achr4P27140_001	EnsemblPlants:GSMUA_Achr4T27140_001	InterPro:IPR001199	InterPro:IPR036400	UniProt:M0SSH6
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF22
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI0002967A6B	:	:

Description

Cytochrome b5 [Source:GMGC_GENE;Acc:GSMUA_Achr4G27140_001]

Coordinates

chr4:-:26090584..26092746

Molecular Weight (calculated)

17379.0 Da

IEP (calculated)

6.508

GRAVY (calculated)

0.023

Length

155 amino acids

Sequence
(BLAST)

001: MADSKIYHCE EVSNHNVIKN RWFVISGRFM MLIRFMDKHP GGNEVLLAAT GKDATDDLED IGHSTLAGDM MIKHYIGEVD SSTVAAKRNS VSPQQEAYNA
101: DKGSDFVIKI LQFLVPILIL GLVFTVQQAP HQSRFRIFFD ICETLSSANF SKLLI

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.