CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89024
EER96942
EES04425
EES12559
EES14314
EES14570
KXG31128
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53560.1	EES12559	AT3G60600.1	21798944
AT5G53560.1	EES14570	AT3G60600.1	21798944
AT5G53560.1	KXG31128	AT3G60600.1	21798944
AT5G53560.1	EER96942	AT4G26455.1	21798944
AT5G53560.1	EES14314	AT4G26455.1	21798944
AT5G53560.1	OQU81760	AT4G26455.1	21798944
AT5G53560.1	EER89024	AT5G47120.1	19054355
AT5G53560.1	EES04425	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G184800.1	Wheat	cytosol	85.82	85.82
TraesCS1A01G181500.1	Wheat	cytosol, golgi	85.07	85.07
Os10t0518200-01	Rice	plasma membrane, plastid	64.93	83.65
Zm00001d032442_P002	Maize	cytosol	83.58	80.58
Zm00001d013839_P001	Maize	plasma membrane	97.01	71.43
Bra022660.1-P	Field mustard	cytosol	70.9	70.9
CDX96233	Canola	cytosol	70.9	70.9
CDY28830	Canola	cytosol	70.9	70.9
VIT_16s0098g01230.t01	Wine grape	cytosol	70.15	70.15
AT5G53560.1	Thale cress	cytosol	69.4	69.4
PGSC0003DMT400013956	Potato	cytosol	69.4	69.4
KRH64355	Soybean	endoplasmic reticulum	71.64	68.57
PGSC0003DMT400047688	Potato	cytosol	67.16	67.16
CDY14370	Canola	cytosol	73.13	62.82
GSMUA_Achr1P04070_001	Banana	cytosol	61.94	62.41
EES17559	Sorghum	cytosol	61.94	62.41
EES02143	Sorghum	cytosol	59.7	59.26
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	70.15	57.67
HORVU1Hr1G047990.4	Barley	plastid	84.33	56.22
TraesCS1B01G199300.1	Wheat	cytosol	83.58	52.83
GSMUA_Achr11P...	Banana	cytosol	51.49	52.27
CDY20247	Canola	mitochondrion	73.13	51.58
KRH53581	Soybean	endoplasmic reticulum	73.13	50.26
Solyc03g082600.2.1	Tomato	plastid	68.66	48.42
GSMUA_Achr4P27140_001	Banana	cytosol	54.48	47.1
EES15848	Sorghum	cytosol	44.03	40.14
OQU85747	Sorghum	mitochondrion	56.72	35.51
EER93435	Sorghum	cytosol	35.07	35.34
OQU80382	Sorghum	extracellular, vacuole	29.1	33.05
EER98759	Sorghum	endoplasmic reticulum, extracellular	24.63	27.97

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EntrezGene:8065155	UniProt:C5WVD0	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
InterPro:Cyt_B5_heme-BS	EnsemblPlants:EER91363	ProteinID:EER91363	ProteinID:EER91363.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005783	GO:GO:0005886	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020
GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173	PRINTS:PR00363
ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF22	SMART:SM01117	EnsemblPlantsGene:SORBI_3001G193200
SUPFAM:SSF55856	unigene:Sbi.8608	UniParc:UPI0001A823B9	RefSeq:XP_002464365.1	:	:

Description

hypothetical protein

Coordinates

chr1:+:17201949..17204504

Molecular Weight (calculated)

14889.8 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.218

Length

134 amino acids

Sequence
(BLAST)

001: MAGENKVFGF EEVAKHNVTK DCWIIIAGKV YDVTPFMDEH PGGDEVLLAV TGKDATADFE DIGHSDSARD MMEKYHIGQI DASTIPAKRT YVHPQQAPSH
101: ADKDNDLLIK ILQFLVPIMI LGLAFGIRQY TKSE

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.