Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0497900-01 | Rice | nucleus | 37.15 | 40.69 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 42.49 | 39.67 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 41.3 | 38.92 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 41.3 | 38.85 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 40.71 | 37.87 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 38.93 | 34.5 |
| GSMUA_Achr10P... | Banana | cytosol | 26.68 | 26.79 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.81 | 23.88 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 27.67 | 23.57 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 27.67 | 23.53 |
| OQU81760 | Sorghum | nucleus | 19.57 | 23.24 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 17.59 | 22.25 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 26.68 | 21.99 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 12.06 | 21.86 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 17.79 | 21.43 |
| CDX94330 | Canola | nucleus | 20.75 | 21.38 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 11.66 | 21.38 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 16.8 | 21.3 |
| CDY17403 | Canola | nucleus | 11.46 | 21.01 |
| Bra026434.1-P | Field mustard | nucleus | 20.36 | 20.81 |
| CDX89333 | Canola | nucleus | 20.16 | 20.61 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 17.98 | 20.59 |
| CDX82542 | Canola | plastid | 17.98 | 20.54 |
| PGSC0003DMT400022426 | Potato | nucleus | 23.52 | 20.31 |
| PGSC0003DMT400056956 | Potato | nucleus | 23.91 | 20.23 |
| KRH56393 | Soybean | cytosol | 23.32 | 20.1 |
| AT5G56210.1 | Thale cress | nucleus | 20.16 | 20.04 |
| KRH62532 | Soybean | endoplasmic reticulum | 23.12 | 20.0 |
| CDY24192 | Canola | plastid | 11.66 | 19.47 |
| AT4G26455.1 | Thale cress | nucleus | 18.58 | 19.22 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 16.6 | 16.22 |
Protein Annotations
| EnsemblPlants:EES14314 | EnsemblPlantsGene:SORBI_3007G218900 | EntrezGene:8067019 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | ProteinID:EES14314 | ProteinID:EES14314.1 | RefSeq:XP_002444819.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0001A877FE | UniProt:C5YJA3 | MapMan:20.4.2.1.2 | : |
Description
hypothetical protein
Coordinates
chr7:+:64712598..64715932
Molecular Weight (calculated)
54550.2 Da
IEP (calculated)
7.228
GRAVY (calculated)
-0.461
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSVNAVANE AAESPEAVAA AAPKIKTFPS PSPAAAATKG RGLRRWRRIR RGDSTGDGAG GEGDEQFHKR RLPLAATGAP WGKHDASAAS ESSTASVESR
101: LVPPPAWPGP GLGFSVGAGN SEDGSGRSST AASAPRVPLP RCDHASVAFS PLERDRPGPG AGAARNPRAA WPMVGCGAAA SISTETSCSR SSVESDLRSS
201: NARQQLGAAG LNDVRKVFSG CYGHGGDEHL SQEVRSTGRC RGNGSSVVGR SVRSSAGEES VGKGSNGRMY WGADLCNESI LVLHRAQEAL ENEIEKITAI
301: GKEPSDEFDI SEDEWSGSVH LEKPNEDLMI RIKHLESRLE EASALIKEKA SRVYELEAIH SRMQPGKNTI ESTNLLLSQC ELDQLYQERM ESEVQCIILT
401: RAYQASATQV KDQMTLYETE KSLSEDYKLL GLKLRHTESR AIVLEKMAEK LQLQCKELSN NSEVLQLRYK ASRVSLFCFV QFLLLCIAMG TYFMRLSPSS
501: TKVVPT
101: LVPPPAWPGP GLGFSVGAGN SEDGSGRSST AASAPRVPLP RCDHASVAFS PLERDRPGPG AGAARNPRAA WPMVGCGAAA SISTETSCSR SSVESDLRSS
201: NARQQLGAAG LNDVRKVFSG CYGHGGDEHL SQEVRSTGRC RGNGSSVVGR SVRSSAGEES VGKGSNGRMY WGADLCNESI LVLHRAQEAL ENEIEKITAI
301: GKEPSDEFDI SEDEWSGSVH LEKPNEDLMI RIKHLESRLE EASALIKEKA SRVYELEAIH SRMQPGKNTI ESTNLLLSQC ELDQLYQERM ESEVQCIILT
401: RAYQASATQV KDQMTLYETE KSLSEDYKLL GLKLRHTESR AIVLEKMAEK LQLQCKELSN NSEVLQLRYK ASRVSLFCFV QFLLLCIAMG TYFMRLSPSS
501: TKVVPT
001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
Arabidopsis Description
WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.