CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, extracellular

Predictor Summary:

nucleus 1
plastid 2
extracellular 2
plasma membrane 3
endoplasmic reticulum 1
vacuole 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12559
EES14570
KXG31128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	EES12559	AT3G60600.1	21798944
AT1G55535.1	EES14570	AT3G60600.1	21798944
AT1G55535.1	KXG31128	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019194_P004	Maize	plasma membrane	95.22	95.22
Zm00001d005229_P001	Maize	plasma membrane	88.05	92.86
TraesCS2D01G242700.1	Wheat	plasma membrane	87.65	87.3
TraesCS2B01G262900.1	Wheat	plasma membrane	86.85	86.51
Os07t0223700-00	Rice	plasma membrane	84.06	68.28
GSMUA_Achr4P02350_001	Banana	plasma membrane	61.75	62.75
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	24.3	62.24
TraesCS2A01G244700.1	Wheat	plasma membrane	75.7	56.38
VIT_06s0004g00110.t01	Wine grape	mitochondrion	53.78	55.1
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	47.81	54.55
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	52.19	52.4
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	51.0	51.41
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	49.8	50.61
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	51.39	50.39
Bra030853.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	51.79	50.0
GSMUA_Achr4P10280_001	Banana	plasma membrane	58.57	48.68
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	49.0	48.43
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	49.8	48.08
AT3G13420.3	Thale cress	mitochondrion	44.62	42.42
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	50.6	39.81
CDY43992	Canola	mitochondrion, plasma membrane	42.63	35.91
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	42.63	35.91

Protein Annotations

EnsemblPlants:EER96079	EnsemblPlantsGene:SORBI_3002G079000	EntrezGene:8078442	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35471	ProteinID:EER96079	ProteinID:EER96079.1	RefSeq:XP_002459558.1	TMHMM:TMhelix	UniParc:UPI0001A83954
UniProt:C5XDD6	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:8219774..8225940

Molecular Weight (calculated)

27751.4 Da

IEP (calculated)

8.463

GRAVY (calculated)

0.243

Length

251 amino acids

Sequence
(BLAST)

001: MPCCPPSLLG VGPRLRSFLR DYDALQSLAL ALIYLQIVCA LIGSLGALFN GVLVINLVIG LFAVVAIESS SQRLGRTYAV LLFFAVVIDV AWFILFSHAI
101: WTITPDEKYG RLFVFSLRLA LWMQIIGFSV RFLSSFLWIQ MYRLGASSST PTYFETNHEA RNSFLSPRSD SVRRSSMADD ILGGSIYDPS YYSSLFEDVR
201: NNSCNHQGDK QSGSNDSGST SAGQSPRLKS FACRSLLAND VESGLRRPLN S

Best Arabidopsis Sequence Match ( AT1G55535.3 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPVSL H

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.