Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- extracellular 2
- nucleus 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027437.1-P | Field mustard | mitochondrion, plasma membrane | 74.62 | 66.11 |
| CDY43992 | Canola | mitochondrion, plasma membrane | 74.62 | 66.11 |
| AT1G55535.1 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 60.98 | 61.92 |
| VIT_06s0004g00110.t01 | Wine grape | mitochondrion | 53.41 | 57.55 |
| KRG89467 | Soybean | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 54.17 | 57.43 |
| Solyc01g050070.2.1 | Tomato | extracellular, plasma membrane, vacuole | 47.73 | 57.27 |
| KRH50507 | Soybean | extracellular, mitochondrion, plasma membrane, vacuole | 54.17 | 57.2 |
| GSMUA_Achr4P02350_001 | Banana | plasma membrane | 45.45 | 48.58 |
| Zm00001d005229_P001 | Maize | plasma membrane | 41.29 | 45.8 |
| TraesCS2B01G262900.1 | Wheat | plasma membrane | 42.8 | 44.84 |
| EER96079 | Sorghum | extracellular, mitochondrion, plasma membrane, plastid | 42.42 | 44.62 |
| Zm00001d019194_P004 | Maize | plasma membrane | 42.42 | 44.62 |
| TraesCS2D01G242700.1 | Wheat | plasma membrane | 42.42 | 44.44 |
| GSMUA_Achr4P10280_001 | Banana | plasma membrane | 48.48 | 42.38 |
| Os07t0223700-00 | Rice | plasma membrane | 44.7 | 38.19 |
| TraesCS2A01G244700.1 | Wheat | plasma membrane | 39.77 | 31.16 |
Protein Annotations
| ArrayExpress:AT3G13420 | EnsemblPlants:AT3G13420.3 | EnsemblPlantsGene:AT3G13420 | EntrezGene:820542 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR35471 | ProteinID:ANM65548.1 | ProteinID:ANM65549.1 | ProteinID:OAP05489.1 | RefSeq:AT3G13420 |
| RefSeq:AT3G13420-TAIR-G | RefSeq:NP_001327507.1 | RefSeq:NP_001327508.1 | TAIR:AT3G13420 | TMHMM:TMhelix | UniParc:UPI0007E175C4 |
| UniProt:A0A178VGS0 | UniProt:A0A1I9LSJ0 | MapMan:35.2 | : | : | : |
Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:A0A178VGS0]
Coordinates
chr3:+:4364480..4366969
Molecular Weight (calculated)
29358.6 Da
IEP (calculated)
8.306
GRAVY (calculated)
0.246
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCVSLRNRI HNWLRDYVRL QSVVLILIYA QIGCALIGSL GALYNGVVLI NLAIALFGLV AIESNSQSLG RTYAVLLFCA ILLDVSWFIL FSKEIWNISS
101: DMYQVFYIFS VKLTLAMEIA GFVVRLSSSL LWFQIYRLGA SIIDSPFPRQ SDSDLRNSFL EPPLLARQRS RDPELRNSFL QAPAIAKQRS RSDEILEDSI
201: DEPASYTPLL DGGLSNITLP NATQVIKHHS AGDIYKGSQS SAAEASRKKS PLSRSLEALH SSLC
101: DMYQVFYIFS VKLTLAMEIA GFVVRLSSSL LWFQIYRLGA SIIDSPFPRQ SDSDLRNSFL EPPLLARQRS RDPELRNSFL QAPAIAKQRS RSDEILEDSI
201: DEPASYTPLL DGGLSNITLP NATQVIKHHS AGDIYKGSQS SAAEASRKKS PLSRSLEALH SSLC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.