Factsheet for Zm00001d005229_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017390_P001
Zm00001d025939_P003
Zm00001d036342_P001
Zm00001d049553_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT1G55535.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT1G55535.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT1G55535.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT1G55535.1	Zm00001d051288_P001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	92.86	88.05
Zm00001d019194_P004	Maize	plasma membrane	92.02	87.25
TraesCS2D01G242700.1	Wheat	plasma membrane	85.71	80.95
TraesCS2B01G262900.1	Wheat	plasma membrane	84.45	79.76
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	26.47	64.29
Os07t0223700-00	Rice	plasma membrane	83.19	64.08
GSMUA_Achr4P02350_001	Banana	plasma membrane	62.18	59.92
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	50.84	55.0
TraesCS2A01G244700.1	Wheat	plasma membrane	76.89	54.3
VIT_06s0004g00110.t01	Wine grape	mitochondrion	54.2	52.65
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	53.36	50.8
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	51.68	49.4
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	49.16	47.37
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	50.84	47.27
Bra030853.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	51.26	46.92
GSMUA_Achr4P10280_001	Banana	plasma membrane	58.4	46.03
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	48.74	45.67
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	49.58	45.38
AT3G13420.3	Thale cress	mitochondrion	45.8	41.29
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	50.42	37.62
CDY43992	Canola	mitochondrion, plasma membrane	43.7	34.9
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	43.7	34.9

Protein Annotations

EnsemblPlants:Zm00001d005229_P001	EnsemblPlants:Zm00001d005229_T001	EnsemblPlantsGene:Zm00001d005229	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35471	ProteinID:ONM20625.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0008423D6C	UniProt:A0A1D6EL60
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:164676117..164681862

Molecular Weight (calculated)

26197.3 Da

IEP (calculated)

6.247

GRAVY (calculated)

0.264

Length

238 amino acids

Sequence
(BLAST)

001: MPCCSPSLLG VGPRVRSFLR DYDALQSLAL ALIYLQIGCA LIGSLGALFN GVLVINLVIG LFAVVAIESS SQRLGRTYAV LLFFAVVLDV AWFILFSHAI
101: WTINPDEKYG ELFVFSLRLA LWMQIIGFSV RFLSSFLWIQ MYRLGASSST PTYFETNHEA RISFLSPRSD SVRRSPTADD ILGGSIYDPS YYSSLFEDVR
201: NNACNHQGDK QSGSNDSGST SAGQTPRLKS FANDVSDT

Best Arabidopsis Sequence Match ( AT1G55535.1 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.