Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12559 | Sorghum | cytosol | 76.51 | 91.57 |
| Os04t0534400-01 | Rice | cytosol | 67.11 | 80.0 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 65.44 | 78.31 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 65.44 | 78.31 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 65.1 | 77.91 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 64.77 | 77.51 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 54.7 | 68.2 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 53.36 | 66.53 |
| Zm00001d049553_P001 | Maize | plasma membrane | 52.68 | 64.34 |
| Solyc01g090910.2.1 | Tomato | nucleus | 48.66 | 62.23 |
| Solyc10g018350.1.1 | Tomato | cytosol | 49.66 | 62.18 |
| Zm00001d017390_P001 | Maize | cytosol | 46.64 | 61.78 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 48.99 | 61.09 |
| Zm00001d051288_P001 | Maize | cytosol | 45.64 | 60.44 |
| Bra003313.1-P | Field mustard | cytosol | 43.62 | 58.3 |
| AT2G45140.1 | Thale cress | cytosol | 46.31 | 57.74 |
| KRH65384 | Soybean | cytosol | 46.64 | 57.68 |
| KRH76164 | Soybean | endoplasmic reticulum | 46.31 | 57.26 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 45.64 | 56.9 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 45.64 | 56.9 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 45.97 | 56.85 |
| CDX71796 | Canola | cytosol | 45.3 | 56.72 |
| CDY41153 | Canola | cytosol | 45.3 | 56.72 |
| GSMUA_Achr11P... | Banana | cytosol | 37.92 | 56.5 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 45.3 | 56.49 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 45.3 | 56.49 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 45.3 | 56.25 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 45.3 | 56.25 |
| CDY48365 | Canola | cytosol | 44.97 | 56.07 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 44.97 | 56.07 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 45.3 | 56.02 |
| Bra007547.1-P | Field mustard | cytosol | 44.63 | 55.88 |
| CDY57247 | Canola | cytosol | 44.97 | 55.83 |
| CDY56247 | Canola | cytosol | 44.97 | 55.83 |
| AT3G60600.1 | Thale cress | cytosol | 47.32 | 55.08 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 43.62 | 53.94 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 50.34 | 53.57 |
| AT2G23830.1 | Thale cress | cytosol | 26.51 | 53.02 |
| PGSC0003DMT400066920 | Potato | cytosol | 46.64 | 52.06 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 39.26 | 51.54 |
| Solyc06g034220.2.1 | Tomato | nucleus | 37.58 | 49.34 |
| Zm00001d032507_P001 | Maize | cytosol, golgi, plasma membrane | 42.28 | 46.49 |
| PGSC0003DMT400076826 | Potato | cytosol | 9.06 | 45.0 |
| Zm00001d036342_P001 | Maize | cytosol | 34.56 | 41.2 |
| Bra035442.1-P | Field mustard | cytosol | 14.09 | 38.89 |
| Zm00001d051383_P001 | Maize | cytosol, plastid | 33.89 | 38.4 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 12.42 | 36.27 |
| Zm00001d014260_P001 | Maize | plastid | 21.48 | 35.96 |
| Zm00001d051329_P002 | Maize | mitochondrion, plasma membrane, plastid | 30.54 | 30.13 |
| Zm00001d017448_P001 | Maize | endoplasmic reticulum, golgi, plastid | 31.21 | 30.0 |
| Zm00001d010495_P002 | Maize | cytosol | 34.56 | 27.11 |
| Zm00001d011904_P001 | Maize | cytosol | 33.89 | 25.83 |
| Zm00001d042180_P002 | Maize | cytosol | 32.89 | 24.44 |
| AT1G51270.3 | Thale cress | cytosol | 35.91 | 16.8 |
| Zm00001d048612_P001 | Maize | cytosol | 21.48 | 9.04 |
Protein Annotations
| EntrezGene:100280363 | Gene3D:2.60.40.10 | MapMan:20.7.1 | UniProt:A0A1D6JAZ6 | ProteinID:AQK45072.1 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom |
| PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF49 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0008451A34 | InterPro:VAP | EnsemblPlantsGene:Zm00001d025939 | EnsemblPlants:Zm00001d025939_P003 |
| EnsemblPlants:Zm00001d025939_T003 | SEG:seg | : | : | : | : |
Description
Vesicle-associated protein 1-1
Coordinates
chr10:-:134160823..134164469
Molecular Weight (calculated)
33184.7 Da
IEP (calculated)
5.850
GRAVY (calculated)
-0.427
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MWSHSKDLLE IEPLELRFPF ETKKQISCSM QLTNRTDDYI GFKVKTTSPK KYCVRPNSGI VPPRSTSDVI GNSNRPTLTS FPPSSFDMGV PKITIIQMPD
101: ALCNFSVTMQ AQKEAPPDMQ CKDKFLVQSV VVAEGTLVKD ITGDMFTKES ANVVDEVKLK VVYIPPPKPP SPVHEESEEG SSPRPSLSDG INLNYQEMQT
201: TRESDESLLF SAVKTHIDQK DYTSEVSSSK DSLNVPSTSA LISKLTEERN SAIQQNNKLR EELDLTRREA NKQNGGFSFV VVVAIALLGM LLGYIMKR
101: ALCNFSVTMQ AQKEAPPDMQ CKDKFLVQSV VVAEGTLVKD ITGDMFTKES ANVVDEVKLK VVYIPPPKPP SPVHEESEEG SSPRPSLSDG INLNYQEMQT
201: TRESDESLLF SAVKTHIDQK DYTSEVSSSK DSLNVPSTSA LISKLTEERN SAIQQNNKLR EELDLTRREA NKQNGGFSFV VVVAIALLGM LLGYIMKR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA RALVTKLTEE KNSAVQLNNR LQQELDQLRR ESKRSKSGGI
201: PFMYVLLVGL IGLILGYIMK RT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA RALVTKLTEE KNSAVQLNNR LQQELDQLRR ESKRSKSGGI
201: PFMYVLLVGL IGLILGYIMK RT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol,plasma membrane,golgi]
SUBAcon: [cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.