Factsheet for Zm00001d029281_P007

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23353019

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92219	Sorghum	cytosol	94.91	95.6
Zm00001d035886_P001	Maize	cytosol, plasma membrane, plastid	18.91	89.66
Os03t0369800-01	Rice	plasma membrane	88.36	88.36
TraesCS4B01G157900.2	Wheat	cytosol	86.55	87.18
TraesCS4D01G161700.1	Wheat	cytosol	86.18	86.81
TraesCS4A01G162300.1	Wheat	cytosol	85.82	86.45
Zm00001d022275_P001	Maize	plasma membrane	79.64	82.64
Zm00001d006939_P001	Maize	cytosol	79.64	82.64
GSMUA_Achr5P21000_001	Banana	cytosol	74.18	76.69
GSMUA_Achr11P...	Banana	cytosol	73.82	76.32
GSMUA_Achr2P07740_001	Banana	cytosol	74.18	75.56
Solyc12g098950.1.1	Tomato	cytosol	71.27	72.59
CDX75916	Canola	cytosol	71.27	72.32
PGSC0003DMT400011730	Potato	cytosol	70.55	71.85
AT3G17440.1	Thale cress	cytosol	70.18	71.75
VIT_05s0020g00750.t01	Wine grape	cytosol	70.18	71.75
Bra001663.1-P	Field mustard	cytosol	70.55	71.59
CDX82368	Canola	cytosol	70.55	71.59
KRH19506	Soybean	cytosol	69.82	71.38
AT1G48240.1	Thale cress	cytosol	68.73	71.32
CDY63023	Canola	cytosol	70.18	71.22
CDY48701	Canola	cytosol	70.18	71.22
Bra021248.1-P	Field mustard	cytosol	70.18	71.22
CDX92133	Canola	cytosol	69.82	70.85
Bra022216.1-P	Field mustard	cytosol	69.82	70.85
KRH02465	Soybean	cytosol	69.09	70.63
CDY66384	Canola	cytosol	69.45	70.48
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	57.45	54.67
CDX77329	Canola	cytosol	44.73	54.19
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	24.73	53.12
CDY41852	Canola	cytosol	26.55	47.71
Bra014118.1-P	Field mustard	cytosol	26.18	47.06
CDY41849	Canola	cytosol	26.18	47.06
Zm00001d030296_P001	Maize	plastid	24.0	46.81
Zm00001d005031_P001	Maize	plastid	23.64	46.1
Zm00001d020848_P001	Maize	plastid	23.64	46.1

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100273395	MapMan:22.7.2.4	UniProt:B4FSW7	EMBL:BT040205	EMBL:BT060626
ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000727	ProteinID:ONL98394.1
PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35	SMART:SM00397	SUPFAM:SSF58038
InterPro:Sec20	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00017B7CB4	EnsemblPlantsGene:Zm00001d029281	EnsemblPlants:Zm00001d029281_P007
EnsemblPlants:Zm00001d029281_T007	SEG:seg	:	:	:	:

Description

Novel plant SNARE 13

Coordinates

chr1:-:64728756..64735149

Molecular Weight (calculated)

31143.6 Da

IEP (calculated)

7.575

GRAVY (calculated)

-0.507

Length

275 amino acids

Sequence
(BLAST)

001: MASDVPMTPE LEQIDGEIHD IFRALQNGFQ KMDKIKDSNR QAKQLEDLTV KMKECKRLIK EFDRILKDEE SNNPPEINKQ LNDRKQFMIK ELNSYVTLRK
101: TYQSSLGNNN KRVELFDMGA GSSEPAAEDN IQMASAMTNQ QLIDTGRNQM DQTDQAIERS KMVVAQTVET GAQTAATLTQ QTEQMKRIGN ELDTVHFSLK
201: KASQLVKEIG RQVATDKCIM AFLFLIVLGV IAIIVVKIVH PNNKNIRDIP GLAPPAQNYQ IHNRRLLWAE ASIGM

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.