CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17440.1	CDX78905	AT4G19030.1	21798944
AT3G17440.1	CDX98596	AT4G19030.1	21798944
AT3G17440.1	CDX99411	AT4G19030.1	21798944
AT3G17440.1	CDY01565	AT4G19030.1	21798944
AT3G17440.1	CDX70995	AT5G22290.1	21798944
AT3G17440.1	CDX88803	AT5G22290.1	21798944
AT3G17440.1	CDX92368	AT5G22290.1	21798944
AT3G17440.1	CDY09128	AT5G22290.1	21798944
AT3G17440.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82368	Canola	cytosol	98.52	98.52
AT3G17440.1	Thale cress	cytosol	95.94	96.65
CDY63023	Canola	cytosol	91.88	91.88
CDY66384	Canola	cytosol	91.88	91.88
CDX92133	Canola	cytosol	91.51	91.51
CDY48701	Canola	cytosol	90.77	90.77
KRH19506	Soybean	cytosol	83.39	84.01
Solyc12g098950.1.1	Tomato	cytosol	83.39	83.7
KRH02465	Soybean	cytosol	82.29	82.9
PGSC0003DMT400011730	Potato	cytosol	82.29	82.59
VIT_05s0020g00750.t01	Wine grape	cytosol	81.55	82.16
GSMUA_Achr11P...	Banana	cytosol	77.12	78.57
GSMUA_Achr2P07740_001	Banana	cytosol	78.23	78.52
GSMUA_Achr5P21000_001	Banana	cytosol	76.38	77.82
Os07t0637400-01	Rice	plasma membrane	70.48	71.8
TraesCS2B01G174800.1	Wheat	cytosol	71.22	71.75
Zm00001d022275_P001	Maize	plasma membrane	70.11	71.7
EER97617	Sorghum	cytosol	70.85	71.38
TraesCS2D01G154800.1	Wheat	cytosol	70.85	71.38
Zm00001d006939_P001	Maize	cytosol	69.74	71.32
Zm00001d029281_P007	Maize	extracellular, plasma membrane	72.32	71.27
EER92219	Sorghum	cytosol	71.59	71.06
TraesCS2A01G149700.1	Wheat	cytosol	70.11	70.63
Os03t0369800-01	Rice	plasma membrane	70.48	69.45
CDX77329	Canola	cytosol	57.93	69.16
TraesCS4D01G161700.1	Wheat	cytosol	68.27	67.77
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	31.73	67.19
TraesCS4A01G162300.1	Wheat	cytosol	67.53	67.03
TraesCS4B01G157900.2	Wheat	cytosol	67.53	67.03
GSMUA_Achr2P07950_001	Banana	cytosol	9.59	65.0
CDY69072	Canola	cytosol, golgi, peroxisome	61.62	63.74
CDY59046	Canola	cytosol, golgi, peroxisome	61.62	63.74
CDX84617	Canola	cytosol, golgi, peroxisome	61.62	63.74
CDY31671	Canola	cytosol, nucleus, peroxisome	61.62	63.26
CDX84253	Canola	cytosol, nucleus, peroxisome	61.62	63.26
CDY41849	Canola	cytosol	32.84	58.17
CDY41852	Canola	cytosol	31.37	55.56
HORVU2Hr1G026870.4	Barley	plastid	56.09	55.47
GSMUA_Achr2P07960_001	Banana	cytosol	19.56	51.96
HORVU1Hr1G069840.13	Barley	extracellular	17.34	22.82

Protein Annotations

EnsemblPlants:CDX75916	EnsemblPlantsGene:GSBRNA2T00123931001	Gene3D:1.20.5.110	GO:A0A078CFG0	InterPro:IPR000727	InterPro:T_SNARE_dom
ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35	PFAM:PF12352	PFscan:PS50192	ProteinID:CDX75916
ProteinID:CDX75916.1	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0004EEA887	MapMan:22.7.2.4

Description

BnaC03g39990D

Coordinates

chrLK031805:-:1812830..1815152

Molecular Weight (calculated)

30619.1 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.539

Length

271 amino acids

Sequence
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD NFRALANGFQ KLDKIKDSSR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPQVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEDNV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAATLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMM FLFLIVCGVV AIIIVKIVHP NNKDIRDIPG LAPPAQSRKL LYLRNQEYMG K

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.