Factsheet for TraesCS2B01G174800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G154800.1	Wheat	cytosol	98.14	98.14
TraesCS2A01G149700.1	Wheat	cytosol	97.4	97.4
Zm00001d022275_P001	Maize	plasma membrane	86.25	87.55
EER97617	Sorghum	cytosol	87.36	87.36
Os07t0637400-01	Rice	plasma membrane	86.25	87.22
Zm00001d006939_P001	Maize	cytosol	85.13	86.42
TraesCS4B01G157900.2	Wheat	cytosol	81.41	80.22
GSMUA_Achr5P21000_001	Banana	cytosol	75.46	76.32
GSMUA_Achr2P07740_001	Banana	cytosol	76.58	76.3
HORVU2Hr1G026870.4	Barley	plastid	75.84	74.45
GSMUA_Achr11P...	Banana	cytosol	73.61	74.44
Solyc12g098950.1.1	Tomato	cytosol	73.61	73.33
PGSC0003DMT400011730	Potato	cytosol	73.61	73.33
VIT_05s0020g00750.t01	Wine grape	cytosol	72.49	72.49
AT3G17440.1	Thale cress	cytosol	71.75	71.75
AT1G48240.1	Thale cress	cytosol	70.63	71.7
CDX75916	Canola	cytosol	71.75	71.22
KRH19506	Soybean	cytosol	71.0	71.0
Bra001663.1-P	Field mustard	cytosol	71.0	70.48
CDX82368	Canola	cytosol	71.0	70.48
KRH02465	Soybean	cytosol	70.26	70.26
Bra021248.1-P	Field mustard	cytosol	70.63	70.11
CDY48701	Canola	cytosol	70.63	70.11
CDY63023	Canola	cytosol	70.63	70.11
CDX92133	Canola	cytosol	70.26	69.74
Bra022216.1-P	Field mustard	cytosol	70.26	69.74
CDY66384	Canola	cytosol	69.89	69.37
TraesCS7B01G288400.1	Wheat	cytosol	58.74	60.31
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	24.91	52.34
CDX77329	Canola	cytosol	43.87	51.98
CDY41849	Canola	cytosol	28.25	49.67
Bra014118.1-P	Field mustard	cytosol	28.25	49.67
CDY41852	Canola	cytosol	27.14	47.71

Protein Annotations

EnsemblPlants:TraesCS2B01G174800.1	EnsemblPlantsGene:TraesCS2B01G174800	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:Sec20	InterPro:T_SNARE_dom
ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35	PFAM:PF03908	PFscan:PS50192	SEG:seg
SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	MapMan:22.7.2.4	:	:

Description

No Description!

Coordinates

chr2B:-:149842731..149845969

Molecular Weight (calculated)

30461.9 Da

IEP (calculated)

8.046

GRAVY (calculated)

-0.500

Length

269 amino acids

Sequence
(BLAST)

001: MAASDVPMSP ELEQIDGEIQ DIFRALQNGF QKIDKIKDSN RQSKQLEELT GRMRECKRLI KEFDRVLKDE EKRNTSEVNK QLNDKKQFMI KELNSYVTMR
101: KTYQSSLGNK RIELFDAGND QVAEDNVQMA SEMSNQQLID SGMKQMDQTD QAIERSKMVV AQTVEVGAQT ATTLTQQTDQ MKRIGNELDS VHFSLKKASQ
201: MVKEIGRQVA TDKCIMGFLF LIVCGVIAII VVKIVNPHNK SIPDIPGLAP PAPPVQNRKL LSVDPFRML

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.