Factsheet for HORVU2Hr1G026870.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48240.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944
AT3G17440.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G174800.1	Wheat	cytosol	74.45	75.84
TraesCS2D01G154800.1	Wheat	cytosol	73.72	75.09
TraesCS2A01G149700.1	Wheat	cytosol	72.99	74.35
Zm00001d022275_P001	Maize	plasma membrane	67.52	69.81
Zm00001d006939_P001	Maize	cytosol	66.79	69.06
Os07t0637400-01	Rice	plasma membrane	66.79	68.8
EER97617	Sorghum	cytosol	67.52	68.77
GSMUA_Achr5P21000_001	Banana	cytosol	59.49	61.28
GSMUA_Achr2P07740_001	Banana	cytosol	60.22	61.11
GSMUA_Achr11P...	Banana	cytosol	57.66	59.4
Solyc12g098950.1.1	Tomato	cytosol	56.93	57.78
PGSC0003DMT400011730	Potato	cytosol	56.93	57.78
VIT_05s0020g00750.t01	Wine grape	cytosol	55.47	56.51
KRH19506	Soybean	cytosol	55.11	56.13
CDX75916	Canola	cytosol	55.47	56.09
AT3G17440.1	Thale cress	cytosol	54.74	55.76
KRH02465	Soybean	cytosol	54.74	55.76
AT1G48240.1	Thale cress	cytosol	53.65	55.47
CDX82368	Canola	cytosol	54.74	55.35
Bra001663.1-P	Field mustard	cytosol	54.74	55.35
CDY63023	Canola	cytosol	54.01	54.61
CDY48701	Canola	cytosol	54.01	54.61
Bra021248.1-P	Field mustard	cytosol	54.01	54.61
CDX92133	Canola	cytosol	53.65	54.24
Bra022216.1-P	Field mustard	cytosol	52.92	53.51
CDY66384	Canola	cytosol	52.55	53.14
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	23.36	50.0
Bra014118.1-P	Field mustard	cytosol	27.37	49.02
CDY41849	Canola	cytosol	27.37	49.02
HORVU7Hr1G091500.1	Barley	cytosol	44.16	46.36
HORVU1Hr1G069840.13	Barley	extracellular	32.48	43.2
CDX77329	Canola	cytosol	35.4	42.73
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	13.14	24.49
CDY41852	Canola	cytosol	13.14	23.53

Protein Annotations

EnsemblPlants:HORVU2Hr1G026870.4	EnsemblPlantsGene:HORVU2Hr1G026870	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil
PANTHER:PTHR21230	PANTHER:PTHR21230:SF35	PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038
UniParc:UPI000B460264	UniProt:A0A287HGM0	MapMan:22.7.2.4	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:86581810..86708661

Molecular Weight (calculated)

30351.1 Da

IEP (calculated)

8.460

GRAVY (calculated)

-0.667

Length

274 amino acids

Sequence
(BLAST)

001: RASTQLGSSH DSSPQTQRPR SPAPTLLPLL APSAALLAST GRAAPHATGR IPLGVGGDPA AAMAASDVPM SPELEQIDGE IQDIFRALQN GFQKIDKIKD
101: SNRQSKQLEE LTGKMRECKR LIKEFDRVLK DEEKRNTSEV NKQLNDKKQF MIKELNSYVT LRKTYQSSLG NKRIELFDAG NDQVAEDNVQ MASEMSNQQL
201: IDSGVRQMDQ TDQAIERSKM VVAQTVEVGA QTATTLTQQT DQMKRIGNEL DSVHFSLKKA SQMVKEIGRQ VLQL

Best Arabidopsis Sequence Match ( AT3G17440.2 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVCGYR

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.