Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48240.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT1G48240.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT1G48240.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT1G48240.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G48240.1 | Thale cress | cytosol | 71.37 | 61.13 |
| CDX75916 | Canola | cytosol | 69.16 | 57.93 |
| CDX82368 | Canola | cytosol | 68.28 | 57.2 |
| CDY63023 | Canola | cytosol | 68.28 | 57.2 |
| CDY48701 | Canola | cytosol | 67.4 | 56.46 |
| CDY66384 | Canola | cytosol | 66.52 | 55.72 |
| CDX92133 | Canola | cytosol | 65.64 | 54.98 |
| KRH19506 | Soybean | cytosol | 62.11 | 52.42 |
| KRH02465 | Soybean | cytosol | 62.11 | 52.42 |
| Solyc12g098950.1.1 | Tomato | cytosol | 61.23 | 51.48 |
| PGSC0003DMT400011730 | Potato | cytosol | 59.91 | 50.37 |
| GSMUA_Achr5P21000_001 | Banana | cytosol | 58.59 | 50.0 |
| VIT_05s0020g00750.t01 | Wine grape | cytosol | 59.03 | 49.81 |
| CDY41849 | Canola | cytosol | 33.48 | 49.67 |
| GSMUA_Achr2P07740_001 | Banana | cytosol | 58.59 | 49.26 |
| GSMUA_Achr11P... | Banana | cytosol | 57.71 | 49.25 |
| CDY53169 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 27.75 | 49.22 |
| Os07t0637400-01 | Rice | plasma membrane | 52.86 | 45.11 |
| Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 54.19 | 44.73 |
| EER92219 | Sorghum | cytosol | 53.74 | 44.69 |
| EER97617 | Sorghum | cytosol | 52.86 | 44.61 |
| Zm00001d022275_P001 | Maize | plasma membrane | 51.54 | 44.15 |
| Zm00001d006939_P001 | Maize | cytosol | 51.54 | 44.15 |
| TraesCS2B01G174800.1 | Wheat | cytosol | 51.98 | 43.87 |
| TraesCS2D01G154800.1 | Wheat | cytosol | 51.54 | 43.49 |
| Os03t0369800-01 | Rice | plasma membrane | 51.98 | 42.91 |
| TraesCS2A01G149700.1 | Wheat | cytosol | 50.66 | 42.75 |
| TraesCS4B01G157900.2 | Wheat | cytosol | 51.1 | 42.49 |
| TraesCS4D01G161700.1 | Wheat | cytosol | 50.66 | 42.12 |
| TraesCS4A01G162300.1 | Wheat | cytosol | 50.22 | 41.76 |
| CDY31671 | Canola | cytosol, nucleus, peroxisome | 47.14 | 40.53 |
| CDX84253 | Canola | cytosol, nucleus, peroxisome | 47.14 | 40.53 |
| CDY69072 | Canola | cytosol, golgi, peroxisome | 46.7 | 40.46 |
| CDX84617 | Canola | cytosol, golgi, peroxisome | 46.7 | 40.46 |
| CDY59046 | Canola | cytosol, golgi, peroxisome | 46.26 | 40.08 |
| CDY41852 | Canola | cytosol | 25.99 | 38.56 |
| HORVU2Hr1G026870.4 | Barley | plastid | 42.73 | 35.4 |
| GSMUA_Achr2P07960_001 | Banana | cytosol | 14.98 | 33.33 |
| GSMUA_Achr2P07950_001 | Banana | cytosol | 4.41 | 25.0 |
| HORVU1Hr1G069840.13 | Barley | extracellular | 11.89 | 13.11 |
Protein Annotations
| EnsemblPlants:CDX77329 | EnsemblPlantsGene:GSBRNA2T00128107001 | Gene3D:1.20.5.110 | GO:A0A078CMS3 | ncoils:Coil | PANTHER:PTHR21230 |
| PANTHER:PTHR21230:SF35 | ProteinID:CDX77329 | ProteinID:CDX77329.1 | SUPFAM:SSF58038 | TMHMM:TMhelix | UniParc:UPI0004EDC86C |
| MapMan:22.7.2.4 | : | : | : | : | : |
Description
BnaC08g03740D
Coordinates
chrLK031810:+:1608041..1609685
Molecular Weight (calculated)
25318.3 Da
IEP (calculated)
4.753
GRAVY (calculated)
-0.363
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDLPMSPH LEQIHGEIQT LKDVSLFLDF DRELKDGEAR NSPQVNKQLN DEKQSMKLNS YVALTKTCLC CMTSGTLGNK KVDLFGTGAG FSSESTAEEN
101: VQMSSSISNQ ELVDAGMKRM DEIEHSKQVV HQTVEIDTQT AANLKGQADQ MGRVGNDLDT IQFSIKKASQ LVKEIERQFL NAKANEAVAT DTCIMMFLFL
201: IVVWVLTLLA KQMVDREPNN KDIRDIQ
101: VQMSSSISNQ ELVDAGMKRM DEIEHSKQVV HQTVEIDTQT AANLKGQADQ MGRVGNDLDT IQFSIKKASQ LVKEIERQFL NAKANEAVAT DTCIMMFLFL
201: IVVWVLTLLA KQMVDREPNN KDIRDIQ
001: MASELPMSPH LEQIHGEIRD HFRALANGFQ RLDKIKDSSR QSKQLEELAE KMRDCKRLVK EFDRELKDGE ARNSPQVNKQ LNDEKQSMIK ELNSYVALRK
101: TYLNTLGNKK VELFDTGAGV SGEPTAEENV QMASTMSNQE LVDAGMKRMD ETDQAIERSK QVVHQTLEVG TQTASNLKGQ TDQMGRVVND LDTIQFSLKK
201: ASQLVKEIGR QVATDKCIMA FLFLIVCGVI AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYFRE
101: TYLNTLGNKK VELFDTGAGV SGEPTAEENV QMASTMSNQE LVDAGMKRMD ETDQAIERSK QVVHQTLEVG TQTASNLKGQ TDQMGRVVND LDTIQFSLKK
201: ASQLVKEIGR QVATDKCIMA FLFLIVCGVI AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYFRE
Arabidopsis Description
NPSN12Novel plant SNARE 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNH6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.