Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48240.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
| AT3G17440.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P21000_001 | Banana | cytosol | 92.11 | 92.11 |
| GSMUA_Achr2P07740_001 | Banana | cytosol | 86.09 | 84.81 |
| AT3G17440.1 | Thale cress | cytosol | 78.57 | 77.7 |
| Zm00001d006939_P001 | Maize | cytosol | 77.07 | 77.36 |
| CDX75916 | Canola | cytosol | 78.57 | 77.12 |
| AT1G48240.1 | Thale cress | cytosol | 76.32 | 76.6 |
| Bra001663.1-P | Field mustard | cytosol | 77.82 | 76.38 |
| CDX82368 | Canola | cytosol | 77.82 | 76.38 |
| Solyc12g098950.1.1 | Tomato | cytosol | 77.44 | 76.3 |
| Zm00001d022275_P001 | Maize | plasma membrane | 75.94 | 76.23 |
| CDY48701 | Canola | cytosol | 77.44 | 76.01 |
| CDY63023 | Canola | cytosol | 77.44 | 76.01 |
| Bra021248.1-P | Field mustard | cytosol | 77.44 | 76.01 |
| PGSC0003DMT400011730 | Potato | cytosol | 77.07 | 75.93 |
| VIT_05s0020g00750.t01 | Wine grape | cytosol | 76.69 | 75.84 |
| EER97617 | Sorghum | cytosol | 76.32 | 75.46 |
| KRH19506 | Soybean | cytosol | 76.32 | 75.46 |
| Os07t0637400-01 | Rice | plasma membrane | 75.19 | 75.19 |
| KRH02465 | Soybean | cytosol | 75.56 | 74.72 |
| CDX92133 | Canola | cytosol | 75.94 | 74.54 |
| CDY66384 | Canola | cytosol | 75.56 | 74.17 |
| Bra022216.1-P | Field mustard | cytosol | 75.56 | 74.17 |
| Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 76.32 | 73.82 |
| EER92219 | Sorghum | cytosol | 75.56 | 73.63 |
| TraesCS2B01G174800.1 | Wheat | cytosol | 74.44 | 73.61 |
| TraesCS2D01G154800.1 | Wheat | cytosol | 73.68 | 72.86 |
| GSMUA_Achr2P07950_001 | Banana | cytosol | 10.9 | 72.5 |
| Os03t0369800-01 | Rice | plasma membrane | 74.81 | 72.36 |
| TraesCS2A01G149700.1 | Wheat | cytosol | 72.93 | 72.12 |
| TraesCS4D01G161700.1 | Wheat | cytosol | 73.68 | 71.79 |
| TraesCS4B01G157900.2 | Wheat | cytosol | 72.93 | 71.06 |
| TraesCS4A01G162300.1 | Wheat | cytosol | 72.18 | 70.33 |
| GSMUA_Achr11P... | Banana | cytosol | 66.54 | 69.41 |
| GSMUA_Achr10P... | Banana | cytosol | 65.04 | 64.07 |
| CDX77329 | Canola | cytosol | 49.25 | 57.71 |
| HORVU2Hr1G026870.4 | Barley | plastid | 59.4 | 57.66 |
| GSMUA_Achr2P07960_001 | Banana | cytosol | 21.8 | 56.86 |
| CDY53169 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 26.69 | 55.47 |
| CDY41849 | Canola | cytosol | 29.7 | 51.63 |
| Bra014118.1-P | Field mustard | cytosol | 29.7 | 51.63 |
| CDY41852 | Canola | cytosol | 27.82 | 48.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P20900_001 | EnsemblPlants:GSMUA_Achr11T20900_001 | EnsemblPlantsGene:GSMUA_Achr11G20900_001 | Gene3D:1.20.5.110 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR000727 | InterPro:Sec20 | InterPro:T_SNARE_dom | ncoils:Coil | PANTHER:PTHR21230 |
| PANTHER:PTHR21230:SF35 | PFAM:PF03908 | PFscan:PS50192 | SMART:SM00397 | SUPFAM:SSF58038 | TMHMM:TMhelix |
| UniParc:UPI000296970D | UniProt:M0RU20 | MapMan:22.7.2.4 | : | : | : |
Description
Novel plant SNARE 13 [Source:GMGC_GENE;Acc:GSMUA_Achr11G20900_001]
Coordinates
chr11:-:21740145..21747755
Molecular Weight (calculated)
30119.5 Da
IEP (calculated)
6.944
GRAVY (calculated)
-0.535
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDLPISPE LEEIDGKIQD IFRALQNGFQ KLDKIKDPSR QTKQLEELTG KMRECKRLIK EFDHELKDQE SRIQPEHNKQ LNEKKQSMIK ELNSYVALRK
101: TYQSNLGNKR VELFDMGAGT SDPVTQENVK MASDMSNQEL IDNGRKQMDE TDQAIERSKM VVEQTIEVGT QTAANLKGQT EQMGRIVNEL DTIHFSIKKA
201: SQLVKEIGRQ VATDKCIMFF LFLIVCGVIA IIIVKIVHPN DKNIRDIPGL APPAGRKLLS LEALGN
101: TYQSNLGNKR VELFDMGAGT SDPVTQENVK MASDMSNQEL IDNGRKQMDE TDQAIERSKM VVEQTIEVGT QTAANLKGQT EQMGRIVNEL DTIHFSIKKA
201: SQLVKEIGRQ VATDKCIMFF LFLIVCGVIA IIIVKIVHPN DKNIRDIPGL APPAGRKLLS LEALGN
001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
Arabidopsis Description
NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.