Factsheet for VIT_05s0020g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48240.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT3G17440.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT3G17440.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011730	Potato	cytosol	84.39	84.07
Solyc12g098950.1.1	Tomato	cytosol	84.39	84.07
KRH19506	Soybean	cytosol	83.27	83.27
KRH02465	Soybean	cytosol	82.53	82.53
AT3G17440.1	Thale cress	cytosol	81.78	81.78
CDX75916	Canola	cytosol	82.16	81.55
Bra001663.1-P	Field mustard	cytosol	80.67	80.07
CDX82368	Canola	cytosol	80.67	80.07
CDX92133	Canola	cytosol	80.3	79.7
Bra022216.1-P	Field mustard	cytosol	79.93	79.34
CDY48701	Canola	cytosol	79.18	78.6
CDY63023	Canola	cytosol	79.18	78.6
CDY66384	Canola	cytosol	79.18	78.6
Bra021248.1-P	Field mustard	cytosol	79.18	78.6
AT1G48240.1	Thale cress	cytosol	76.95	78.11
GSMUA_Achr5P21000_001	Banana	cytosol	76.58	77.44
GSMUA_Achr2P07740_001	Banana	cytosol	77.7	77.41
GSMUA_Achr11P...	Banana	cytosol	75.84	76.69
TraesCS2B01G174800.1	Wheat	cytosol	72.49	72.49
Zm00001d006939_P001	Maize	cytosol	71.0	72.08
EER97617	Sorghum	cytosol	71.38	71.38
TraesCS2D01G154800.1	Wheat	cytosol	71.38	71.38
Zm00001d022275_P001	Maize	plasma membrane	70.26	71.32
TraesCS2A01G149700.1	Wheat	cytosol	71.0	71.0
Os07t0637400-01	Rice	plasma membrane	69.89	70.68
EER92219	Sorghum	cytosol	71.38	70.33
Zm00001d029281_P007	Maize	extracellular, plasma membrane	71.75	70.18
TraesCS4D01G161700.1	Wheat	cytosol	71.0	69.96
TraesCS4B01G157900.2	Wheat	cytosol	69.89	68.86
TraesCS4A01G162300.1	Wheat	cytosol	69.52	68.5
Os03t0369800-01	Rice	plasma membrane	69.89	68.36
VIT_02s0012g00140.t01	Wine grape	nucleus	63.2	65.13
GSMUA_Achr2P07950_001	Banana	cytosol	9.29	62.5
CDX77329	Canola	cytosol	49.81	59.03
HORVU2Hr1G026870.4	Barley	plastid	56.51	55.47
CDY41849	Canola	cytosol	30.86	54.25
Bra014118.1-P	Field mustard	cytosol	30.86	54.25
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	25.65	53.91
GSMUA_Achr2P07960_001	Banana	cytosol	19.7	51.96
CDY41852	Canola	cytosol	27.88	49.02
HORVU1Hr1G069840.13	Barley	extracellular	17.1	22.33

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100251065	wikigene:100251065	MapMan:22.7.2.4	EMBL:AM480656	ProteinID:CAN79626
ProteinID:CAN79626.1	ProteinID:CBI26008	ProteinID:CBI26008.3	ncoils:Coil	UniProt:D7T687	EMBL:FN595749
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005783	GO:GO:0005789
GO:GO:0005794	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006888	GO:GO:0006891
GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0012507	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280	InterPro:IPR000727
EntrezGene:LOC100251065	wikigene:LOC100251065	PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35
SMART:SM00397	SUPFAM:SSF58038	InterPro:Sec20	TIGR:TC61641	TIGR:TC64613	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI00015C7789	ArrayExpress:VIT_05s0020g00750	EnsemblPlantsGene:VIT_05s0020g00750	EnsemblPlants:VIT_05s0020g00750.t01	unigene:Vvi.7654
RefSeq:XP_002267688	RefSeq:XP_002267688.1	RefSeq:XP_010649684.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:2623475..2635467

Molecular Weight (calculated)

30189.5 Da

IEP (calculated)

7.201

GRAVY (calculated)

-0.474

Length

269 amino acids

Sequence
(BLAST)

001: MATDLQMTPQ LEQIHGEIRD NFRALANGFQ KLDKIKDPNR QSKQLEELTG RMRECKRLIK EFDREMKDEE RGNPPEVNKQ LNDEKQSMVK ELNSYVALRK
101: TFMSSLGNKR LELFDMGAGA SDPTADDNVQ VASSMSNQEL IQAGNKTMDE TDQTIERSKQ VVAQTIEVGT GTAVTLKGQT DQMGRIVNEL DTIQFSIKKA
201: SQLVKEIGRQ VATDKCIMLF LFLIVCGVIA IIIVKIVNPN NKSIKDVPGL APPAPSRRLL YLKASDYLE

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.