Factsheet for PGSC0003DMT400011730

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48240.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G48240.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT3G17440.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT3G17440.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT3G17440.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT3G17440.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098950.1.1	Tomato	cytosol	98.89	98.89
KRH19506	Soybean	cytosol	84.44	84.76
KRH02465	Soybean	cytosol	84.07	84.39
VIT_05s0020g00750.t01	Wine grape	cytosol	84.07	84.39
AT3G17440.1	Thale cress	cytosol	82.59	82.9
CDX75916	Canola	cytosol	82.59	82.29
CDY63023	Canola	cytosol	81.85	81.55
Bra021248.1-P	Field mustard	cytosol	81.85	81.55
AT1G48240.1	Thale cress	cytosol	79.63	81.13
Bra001663.1-P	Field mustard	cytosol	81.11	80.81
CDY48701	Canola	cytosol	81.11	80.81
CDX82368	Canola	cytosol	81.11	80.81
CDX92133	Canola	cytosol	80.0	79.7
CDY66384	Canola	cytosol	79.63	79.34
Bra022216.1-P	Field mustard	cytosol	79.63	79.34
GSMUA_Achr2P07740_001	Banana	cytosol	78.15	78.15
GSMUA_Achr5P21000_001	Banana	cytosol	76.67	77.82
GSMUA_Achr11P...	Banana	cytosol	75.93	77.07
Zm00001d006939_P001	Maize	cytosol	72.59	73.96
TraesCS2B01G174800.1	Wheat	cytosol	73.33	73.61
Zm00001d022275_P001	Maize	plasma membrane	72.22	73.58
TraesCS2D01G154800.1	Wheat	cytosol	72.96	73.23
EER97617	Sorghum	cytosol	72.96	73.23
TraesCS2A01G149700.1	Wheat	cytosol	72.59	72.86
Os07t0637400-01	Rice	plasma membrane	70.74	71.8
EER92219	Sorghum	cytosol	71.48	70.7
Zm00001d029281_P007	Maize	extracellular, plasma membrane	71.85	70.55
Os03t0369800-01	Rice	plasma membrane	71.48	70.18
TraesCS4B01G157900.2	Wheat	cytosol	70.0	69.23
TraesCS4D01G161700.1	Wheat	cytosol	70.0	69.23
TraesCS4A01G162300.1	Wheat	cytosol	69.26	68.5
PGSC0003DMT400004684	Potato	cytosol	65.93	68.2
CDX77329	Canola	cytosol	50.37	59.91
HORVU2Hr1G026870.4	Barley	plastid	57.78	56.93
CDY41849	Canola	cytosol	31.48	55.56
Bra014118.1-P	Field mustard	cytosol	31.48	55.56
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	26.3	55.47
GSMUA_Achr2P07960_001	Banana	cytosol	20.37	53.92
CDY41852	Canola	cytosol	30.37	53.59
GSMUA_Achr2P07950_001	Banana	cytosol	7.78	52.5
HORVU1Hr1G069840.13	Barley	extracellular	16.67	21.84

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102592689	MapMan:22.7.2.4	ncoils:Coil	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	UniProt:M1A017	PFAM:PF03908	EnsemblPlantsGene:PGSC0003DMG400004602	PGSC:PGSC0003DMG400004602
EnsemblPlants:PGSC0003DMT400011730	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35	SMART:SM00397	SUPFAM:SSF58038
InterPro:Sec20	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002950106	RefSeq:XP_006349864.1	SEG:seg

Description

Novel plant snare [Source:PGSC_GENE;Acc:PGSC0003DMG400004602]

Coordinates

chr12:+:59774396..59781563

Molecular Weight (calculated)

30450.8 Da

IEP (calculated)

6.943

GRAVY (calculated)

-0.547

Length

270 amino acids

Sequence
(BLAST)

001: MANLDLQMNP QMEQIHGEIR DNFRALANGF QKLDKIKDSN RQSKQLEELT GKMRECKRLV KEFDREIKDE ESKSPPEVNK QLNDEKQSMI KELNSYVALR
101: KTYMSSLGNK RVELFDMGAG GSDPTAEENA QMASEMSNQE LISAGNKTMD ETDQAIERSK QVVHQTIEVG TQTASTLKGQ TDQMGRVVNE LDTIHFSIKK
201: ASQLVKEIGR QVATDKCIML FLFLIVCGVV AIIVVKIVNP HNKDIRDIPG LAPPAPARRL LYLRPGQDFM

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.