Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48240.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
| AT3G17440.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G069840.13 | Barley | extracellular | 67.5 | 13.11 |
| CDY53169 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 40.0 | 12.5 |
| GSMUA_Achr11P... | Banana | cytosol | 72.5 | 10.9 |
| GSMUA_Achr5P21000_001 | Banana | cytosol | 70.0 | 10.53 |
| GSMUA_Achr2P07740_001 | Banana | cytosol | 70.0 | 10.37 |
| Bra001663.1-P | Field mustard | cytosol | 65.0 | 9.59 |
| Bra022216.1-P | Field mustard | cytosol | 65.0 | 9.59 |
| CDX75916 | Canola | cytosol | 65.0 | 9.59 |
| CDX82368 | Canola | cytosol | 65.0 | 9.59 |
| AT1G48240.1 | Thale cress | cytosol | 62.5 | 9.43 |
| AT3G17440.1 | Thale cress | cytosol | 62.5 | 9.29 |
| VIT_05s0020g00750.t01 | Wine grape | cytosol | 62.5 | 9.29 |
| KRH19506 | Soybean | cytosol | 62.5 | 9.29 |
| KRH02465 | Soybean | cytosol | 62.5 | 9.29 |
| CDY63023 | Canola | cytosol | 62.5 | 9.23 |
| CDY48701 | Canola | cytosol | 62.5 | 9.23 |
| CDX92133 | Canola | cytosol | 62.5 | 9.23 |
| Bra021248.1-P | Field mustard | cytosol | 62.5 | 9.23 |
| CDY66384 | Canola | cytosol | 60.0 | 8.86 |
| GSMUA_Achr11P... | Banana | cytosol | 52.5 | 8.24 |
| PGSC0003DMT400011730 | Potato | cytosol | 52.5 | 7.78 |
| Solyc12g098950.1.1 | Tomato | cytosol | 52.5 | 7.78 |
| GSMUA_Achr10P... | Banana | cytosol | 50.0 | 7.41 |
| CDX77329 | Canola | cytosol | 25.0 | 4.41 |
| CDY41849 | Canola | cytosol | 7.5 | 1.96 |
| Bra014118.1-P | Field mustard | cytosol | 7.5 | 1.96 |
| CDY41852 | Canola | cytosol | 0.0 | 0.0 |
| GSMUA_Achr2P07960_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P07950_001 | EnsemblPlants:GSMUA_Achr2T07950_001 | EnsemblPlantsGene:GSMUA_Achr2G07950_001 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF35 | UniParc:UPI000294DBDF |
| UniProt:M0S636 | MapMan:35.2 | : | : | : | : |
Description
Novel plant SNARE 13 [Source:GMGC_GENE;Acc:GSMUA_Achr2G07950_001]
Coordinates
chr2:+:12168349..12169934
Molecular Weight (calculated)
4470.3 Da
IEP (calculated)
4.803
GRAVY (calculated)
-0.840
Length
40 amino acids
Sequence
(BLAST)
(BLAST)
1: MASGASISTE LEQNDGEIRD IFRALQNGFQ KLDKMKDPKS
001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVCGYR
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVCGYR
Arabidopsis Description
NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.