Factsheet for GSMUA_Achr10P07550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P09270_001
GSMUA_Achr6P22560_001
GSMUA_Achr9P00150_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	GSMUA_Achr5P09270_001	AT3G09740.1	23515225
AT2G35190.1	GSMUA_Achr6P22560_001	AT3G09740.1	23515225
AT2G35190.1	GSMUA_Achr9P00150_001	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	82.59	87.45
EER90393	Sorghum	cytosol	73.33	77.34
PGSC0003DMT400004684	Potato	cytosol	73.7	76.25
Solyc08g077550.2.1	Tomato	plastid	73.7	76.25
VIT_02s0012g00140.t01	Wine grape	nucleus	73.33	75.86
KRH04258	Soybean	cytosol	71.48	73.95
TraesCS7B01G288400.1	Wheat	cytosol	71.48	73.66
TraesCS7A01G385500.1	Wheat	cytosol	71.11	73.56
HORVU7Hr1G091500.1	Barley	cytosol	71.11	73.56
Os06t0715100-02	Rice	plasma membrane	70.74	73.18
KRH57547	Soybean	cytosol	70.74	73.18
TraesCS7D01G382100.1	Wheat	cytosol	70.74	73.18
CDX84617	Canola	cytosol, golgi, peroxisome	70.74	72.9
CDY69072	Canola	cytosol, golgi, peroxisome	70.74	72.9
Bra023003.1-P	Field mustard	cytosol, golgi, peroxisome	70.74	72.9
Bra017331.1-P	Field mustard	cytosol	70.37	72.52
CDY59046	Canola	cytosol, golgi, peroxisome	70.0	72.14
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	70.74	72.08
CDX84253	Canola	cytosol, nucleus, peroxisome	69.26	70.83
CDY31671	Canola	cytosol, nucleus, peroxisome	68.89	70.45
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	68.89	70.45
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	72.22	67.47
GSMUA_Achr5P21000_001	Banana	cytosol	64.07	65.04
GSMUA_Achr11P...	Banana	cytosol	64.07	65.04
GSMUA_Achr2P07740_001	Banana	cytosol	63.33	63.33
GSMUA_Achr2P07950_001	Banana	cytosol	7.41	50.0
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	27.04	49.66
GSMUA_Achr2P07960_001	Banana	cytosol	17.04	45.1

Protein Annotations

EnsemblPlants:GSMUA_Achr10P07550_001	EnsemblPlants:GSMUA_Achr10T07550_001	EnsemblPlantsGene:GSMUA_Achr10G07550_001	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:Sec20	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR21230
PANTHER:PTHR21230:SF27	PFAM:PF03908	PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI0002951224	UniProt:M0RG81	MapMan:13.4.2.3.2	MapMan:22.7.2.4	:

Description

Novel plant SNARE 11 [Source:GMGC_GENE;Acc:GSMUA_Achr10G07550_001]

Coordinates

chr10:+:17742607..17750391

Molecular Weight (calculated)

30460.9 Da

IEP (calculated)

6.176

GRAVY (calculated)

-0.442

Length

270 amino acids

Sequence
(BLAST)

001: MDLSDVSEEL ALIEGQINDV FRALSNGFQK LEKIKDPNRR SRQLEELTDK MRECKRLIKE FERAVKEEES RNTHNTNRML NEKKQSMIKE LNSYVALKKQ
101: HASENKRIDL FDGPGGGDVF AEENVQLASS MTNEQLIDSG HRMMDETDQA IERSKQVVEE TINVGAETAA ALKAQTEQMS RIVNELDSIH FSMKKASQLV
201: KELGRQVATD RCIMAMLFLI VIGVVAIIIV KVEKMCLIPT NIVSGRLVNP NNKDISDIPG LPPPANRKLL

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.