Factsheet for Solyc08g077550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g084210.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	Solyc10g084210.1.1	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004684	Potato	cytosol	99.23	99.23
VIT_02s0012g00140.t01	Wine grape	nucleus	81.99	81.99
GSMUA_Achr11P...	Banana	cytosol	78.93	80.78
KRH04258	Soybean	cytosol	79.31	79.31
KRH57547	Soybean	cytosol	78.16	78.16
EER90393	Sorghum	cytosol	75.86	77.34
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	77.39	76.23
Bra023003.1-P	Field mustard	cytosol, golgi, peroxisome	75.86	75.57
CDX84617	Canola	cytosol, golgi, peroxisome	75.86	75.57
CDY69072	Canola	cytosol, golgi, peroxisome	75.86	75.57
Os06t0715100-02	Rice	plasma membrane	74.71	74.71
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	75.48	74.62
CDY31671	Canola	cytosol, nucleus, peroxisome	75.48	74.62
Bra017331.1-P	Field mustard	cytosol	74.71	74.43
CDY59046	Canola	cytosol, golgi, peroxisome	74.33	74.05
CDX84253	Canola	cytosol, nucleus, peroxisome	74.71	73.86
GSMUA_Achr10P...	Banana	cytosol	76.25	73.7
HORVU7Hr1G091500.1	Barley	cytosol	73.18	73.18
TraesCS7D01G382100.1	Wheat	cytosol	73.18	73.18
TraesCS7A01G385500.1	Wheat	cytosol	72.8	72.8
TraesCS7B01G288400.1	Wheat	cytosol	72.8	72.52
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	75.48	68.17
Solyc12g098950.1.1	Tomato	cytosol	68.2	65.93
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	30.65	54.42

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.2	MapMan:22.7.2.4	ncoils:Coil	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0005829
GO:GO:0005886	GO:GO:0006623	GO:GO:0006810	GO:GO:0006888	GO:GO:0006891	GO:GO:0006896
GO:GO:0008150	GO:GO:0009504	GO:GO:0009987	GO:GO:0012507	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280	InterPro:IPR000727
UniProt:K4CNB4	PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF27	SMART:SM00397
SUPFAM:SSF58038	InterPro:Sec20	EnsemblPlantsGene:Solyc08g077550.2	EnsemblPlants:Solyc08g077550.2.1	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI000276C4A5	SEG:seg	:	:	:	:

Description

Novel plant SNARE 11 [Source:Projected from Arabidopsis thaliana (AT2G35190) UniProtKB/Swiss-Prot;Acc:Q944A9]

Coordinates

chr8:+:61528975..61535643

Molecular Weight (calculated)

29404.5 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.434

Length

261 amino acids

Sequence
(BLAST)

001: MASLSGLSEE LGEIEGQISD IFRALSNGFQ KLEKIKDSNR QSRQLEELTG KMRECKRLIK EFDREVKDLE YKSDADTTKM LSEKKQSMIK ELNSYVALKK
101: QYASNIENKR VDLFEGPGEG FAEENGLLAS NMSNQQLMDQ GNRMMDETDE AIERSKKVVH ETVNVGTETA AALKAQTEQM SRIVNELDSI HFSIKKATQL
201: VKELGRQVAT DRCIMALLFL IVIGVIAIII VKIVNPHNKD IRDIPGLAPP APSRRLLAYP Y

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.