Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G382100.1 | Wheat | cytosol | 98.09 | 98.47 |
| TraesCS7A01G385500.1 | Wheat | cytosol | 97.33 | 97.7 |
| HORVU7Hr1G091500.1 | Barley | cytosol | 96.56 | 96.93 |
| EER90393 | Sorghum | cytosol | 85.5 | 87.5 |
| Os06t0715100-02 | Rice | plasma membrane | 85.88 | 86.21 |
| Zm00001d036406_P001 | Maize | mitochondrion, plasma membrane | 84.73 | 76.82 |
| GSMUA_Achr11P... | Banana | cytosol | 73.66 | 75.69 |
| VIT_02s0012g00140.t01 | Wine grape | nucleus | 72.52 | 72.8 |
| Solyc08g077550.2.1 | Tomato | plastid | 72.52 | 72.8 |
| PGSC0003DMT400004684 | Potato | cytosol | 72.52 | 72.8 |
| CDY69072 | Canola | cytosol, golgi, peroxisome | 71.76 | 71.76 |
| CDX84617 | Canola | cytosol, golgi, peroxisome | 71.76 | 71.76 |
| Bra023003.1-P | Field mustard | cytosol, golgi, peroxisome | 71.76 | 71.76 |
| GSMUA_Achr10P... | Banana | cytosol | 73.66 | 71.48 |
| Bra017331.1-P | Field mustard | cytosol | 71.37 | 71.37 |
| CDY59046 | Canola | cytosol, golgi, peroxisome | 70.99 | 70.99 |
| AT2G35190.1 | Thale cress | cytosol, nucleus, peroxisome | 71.76 | 70.94 |
| CDX84253 | Canola | cytosol, nucleus, peroxisome | 70.99 | 70.45 |
| KRH57547 | Soybean | cytosol | 69.85 | 70.11 |
| KRH04258 | Soybean | cytosol | 69.85 | 70.11 |
| Bra005361.1-P | Field mustard | cytosol, nucleus, peroxisome | 70.61 | 70.08 |
| CDY31671 | Canola | cytosol, nucleus, peroxisome | 70.61 | 70.08 |
| TraesCS2B01G174800.1 | Wheat | cytosol | 60.31 | 58.74 |
| TraesCS4B01G157900.2 | Wheat | cytosol | 60.31 | 57.88 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.2 | MapMan:22.7.2.4 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0009504 | GO:GO:0016020 | InterPro:IPR000727 |
| PFAM:PF03908 | PFscan:PS50192 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF27 | SMART:SM00397 | SUPFAM:SSF58038 |
| InterPro:Sec20 | TMHMM:TMhelix | InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCS7B01G288400 | EnsemblPlants:TraesCS7B01G288400.1 | TIGR:cd15861 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:524235425..524242116
Molecular Weight (calculated)
29239.1 Da
IEP (calculated)
5.791
GRAVY (calculated)
-0.405
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLASVNEEL AEIDGQIADI FRALQNGFQK LDKIKDANRR SRQLEELTDK MRDCKRLIKD FERVVKDEAG SVDPNTSKFL NERKQSLIKE LNSYVALKKQ
101: HASENKRVDL FDAPSGEDAF GEENVLLASN MTNQQLMQHG DNLMDETDQA LARSKQTVQE TINVGTETAA ALKAQTEQMS RVVNELDSIH FSMKKASKLV
201: KEIGRQVATD RCIMGLLFLI VAGVIAVIIV KIVNPHNKDI PDLPGLAPPV SRRLLSIVEN NG
101: HASENKRVDL FDAPSGEDAF GEENVLLASN MTNQQLMQHG DNLMDETDQA LARSKQTVQE TINVGTETAA ALKAQTEQMS RVVNELDSIH FSMKKASKLV
201: KEIGRQVATD RCIMGLLFLI VAGVIAVIIV KIVNPHNKDI PDLPGLAPPV SRRLLSIVEN NG
001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
Arabidopsis Description
NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.