Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d038931_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35190.1 | Zm00001d038931_P002 | AT3G09740.1 | 23515225 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90393 | Sorghum | cytosol | 86.16 | 97.27 |
| Os06t0715100-02 | Rice | plasma membrane | 80.62 | 89.27 |
| HORVU7Hr1G091500.1 | Barley | cytosol | 76.82 | 85.06 |
| TraesCS7B01G288400.1 | Wheat | cytosol | 76.82 | 84.73 |
| TraesCS7A01G385500.1 | Wheat | cytosol | 76.47 | 84.67 |
| TraesCS7D01G382100.1 | Wheat | cytosol | 76.47 | 84.67 |
| GSMUA_Achr11P... | Banana | cytosol | 68.86 | 78.04 |
| Zm00001d035886_P001 | Maize | cytosol, plasma membrane, plastid | 15.22 | 75.86 |
| Solyc08g077550.2.1 | Tomato | plastid | 68.17 | 75.48 |
| PGSC0003DMT400004684 | Potato | cytosol | 68.17 | 75.48 |
| VIT_02s0012g00140.t01 | Wine grape | nucleus | 67.13 | 74.33 |
| AT2G35190.1 | Thale cress | cytosol, nucleus, peroxisome | 67.13 | 73.21 |
| CDY69072 | Canola | cytosol, golgi, peroxisome | 66.09 | 72.9 |
| CDX84617 | Canola | cytosol, golgi, peroxisome | 66.09 | 72.9 |
| Bra023003.1-P | Field mustard | cytosol, golgi, peroxisome | 66.09 | 72.9 |
| Bra017331.1-P | Field mustard | cytosol | 65.74 | 72.52 |
| GSMUA_Achr10P... | Banana | cytosol | 67.47 | 72.22 |
| CDY59046 | Canola | cytosol, golgi, peroxisome | 65.4 | 72.14 |
| CDX84253 | Canola | cytosol, nucleus, peroxisome | 65.05 | 71.21 |
| Bra005361.1-P | Field mustard | cytosol, nucleus, peroxisome | 64.71 | 70.83 |
| CDY31671 | Canola | cytosol, nucleus, peroxisome | 64.71 | 70.83 |
| KRH04258 | Soybean | cytosol | 63.67 | 70.5 |
| KRH57547 | Soybean | cytosol | 62.98 | 69.73 |
| Zm00001d006939_P001 | Maize | cytosol | 55.36 | 60.38 |
| Zm00001d022275_P001 | Maize | plasma membrane | 55.36 | 60.38 |
| Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 54.67 | 57.45 |
| HORVU2Hr1G084560.1 | Barley | extracellular, plasma membrane | 29.07 | 57.14 |
| Zm00001d030296_P001 | Maize | plastid | 20.07 | 41.13 |
| Zm00001d005031_P001 | Maize | plastid | 19.72 | 40.43 |
| Zm00001d020848_P001 | Maize | plastid | 19.72 | 40.43 |
Protein Annotations
| EnsemblPlants:Zm00001d036406_P001 | EnsemblPlants:Zm00001d036406_T001 | EnsemblPlantsGene:Zm00001d036406 | Gene3D:1.20.5.110 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0009504 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF27 | ProteinID:AQK80935.1 | SEG:seg | SUPFAM:SSF58038 |
| TMHMM:TMhelix | UniParc:UPI00084374F8 | UniProt:A0A1D6LMY8 | MapMan:22.7.2.4 | : | : |
Description
Novel plant SNARE 11
Coordinates
chr6:+:87050981..87055612
Molecular Weight (calculated)
32608.6 Da
IEP (calculated)
8.330
GRAVY (calculated)
-0.346
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLASVNEEL AEIDGQIGDI LRVLQNGFQK LEKIKDANRR SRQLEELTDK MRDCKRLIKD FERVSKAEAE HTDPATAKML HDRKQSMIKE LNSYVALKKQ
101: QASENKRIDL FDGPSAEDGF GEENVLLASN MTNQQLMDQG NQLMDETDQA IARSKQTVQE TVNVGTETAA ALKAQVRFFS YFQKESIALL CCPIRKAKGN
201: FGLFLLHQTE QMSRVVNELD SIHFSIKKAS QLVKEIGRQV ATDRCIMAML FLIVAGVIAI IIVKIVNPHN KDIRDIPGLA PPVSRRLLR
101: QASENKRIDL FDGPSAEDGF GEENVLLASN MTNQQLMDQG NQLMDETDQA IARSKQTVQE TVNVGTETAA ALKAQVRFFS YFQKESIALL CCPIRKAKGN
201: FGLFLLHQTE QMSRVVNELD SIHFSIKKAS QLVKEIGRQV ATDRCIMAML FLIVAGVIAI IIVKIVNPHN KDIRDIPGLA PPVSRRLLR
001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
Arabidopsis Description
NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.