CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95962
KRH19848
KRH32439
KRH67670

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	KRG95962	AT3G09740.1	23515225
AT2G35190.1	KRH19848	AT3G09740.1	23515225
AT2G35190.1	KRH32439	AT3G09740.1	23515225
AT2G35190.1	KRH67670	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57547	Soybean	cytosol	96.93	96.93
PGSC0003DMT400004684	Potato	cytosol	79.69	79.69
VIT_02s0012g00140.t01	Wine grape	nucleus	79.31	79.31
Solyc08g077550.2.1	Tomato	plastid	79.31	79.31
GSMUA_Achr11P...	Banana	cytosol	75.1	76.86
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	76.63	75.47
CDY69072	Canola	cytosol, golgi, peroxisome	74.71	74.43
CDX84617	Canola	cytosol, golgi, peroxisome	74.71	74.43
Bra023003.1-P	Field mustard	cytosol, golgi, peroxisome	74.71	74.43
CDY31671	Canola	cytosol, nucleus, peroxisome	75.1	74.24
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	75.1	74.24
CDX84253	Canola	cytosol, nucleus, peroxisome	75.1	74.24
Bra017331.1-P	Field mustard	cytosol	74.33	74.05
CDY59046	Canola	cytosol, golgi, peroxisome	73.95	73.66
EER90393	Sorghum	cytosol	70.5	71.88
GSMUA_Achr10P...	Banana	cytosol	73.95	71.48
HORVU7Hr1G091500.1	Barley	cytosol	70.11	70.11
TraesCS7B01G288400.1	Wheat	cytosol	70.11	69.85
Os06t0715100-02	Rice	plasma membrane	69.73	69.73
TraesCS7A01G385500.1	Wheat	cytosol	69.73	69.73
TraesCS7D01G382100.1	Wheat	cytosol	69.73	69.73
KRH19506	Soybean	cytosol	66.67	64.68
KRH02465	Soybean	cytosol	66.28	64.31
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	70.5	63.67
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	30.27	53.74

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100786429	MapMan:13.4.2.3.2	MapMan:22.7.2.4	EMBL:ACUP02010393	ncoils:Coil
EnsemblPlantsGene:GLYMA_17G149800	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005783
GO:GO:0005789	GO:GO:0005794	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006888
GO:GO:0006891	GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0012507	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280
UniProt:I1MV96	InterPro:IPR000727	EnsemblPlants:KRH04258	ProteinID:KRH04258	ProteinID:KRH04258.1	PFAM:PF03908
PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF27	SMART:SM00397	SUPFAM:SSF58038	InterPro:Sec20
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000233EC2B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:12415373..12419976

Molecular Weight (calculated)

29668.8 Da

IEP (calculated)

6.692

GRAVY (calculated)

-0.509

Length

261 amino acids

Sequence
(BLAST)

001: MDQLSAISED LAEIDGHIAD NFRALSNGFQ KLEKIKDSNR QSRQLEDLTE KLRECKRLIK EFDKEVKTLE SSFDRETNKM LNEKKQSMIK ELNSYVALKK
101: QYATNIENKR IELFEGPNEG YAEENGLLAS SMTNEQLMDH GNRMMNETDQ AIERGKKVVQ DTINVGTDTA AALKAQTEQM SRVVNELDSI HFSIKKASKL
201: VKEIGRQVAT DKCIMALLFL IVIGVIAIII VKLVHPENKD IRDIPGLAPP VQNRRLLWSH S

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.