Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES18638 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35190.1 | EES18638 | AT3G09740.1 | 23515225 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0715100-02 | Rice | plasma membrane | 92.19 | 90.42 |
| Zm00001d036406_P001 | Maize | mitochondrion, plasma membrane | 97.27 | 86.16 |
| HORVU7Hr1G091500.1 | Barley | cytosol | 87.5 | 85.82 |
| TraesCS7B01G288400.1 | Wheat | cytosol | 87.5 | 85.5 |
| TraesCS7D01G382100.1 | Wheat | cytosol | 87.11 | 85.44 |
| TraesCS7A01G385500.1 | Wheat | cytosol | 87.11 | 85.44 |
| GSMUA_Achr11P... | Banana | cytosol | 77.34 | 77.65 |
| Solyc08g077550.2.1 | Tomato | plastid | 77.34 | 75.86 |
| PGSC0003DMT400004684 | Potato | cytosol | 77.34 | 75.86 |
| VIT_02s0012g00140.t01 | Wine grape | nucleus | 75.39 | 73.95 |
| GSMUA_Achr10P... | Banana | cytosol | 77.34 | 73.33 |
| CDY69072 | Canola | cytosol, golgi, peroxisome | 75.0 | 73.28 |
| Bra017331.1-P | Field mustard | cytosol | 75.0 | 73.28 |
| Bra023003.1-P | Field mustard | cytosol, golgi, peroxisome | 75.0 | 73.28 |
| CDX84617 | Canola | cytosol, golgi, peroxisome | 75.0 | 73.28 |
| AT2G35190.1 | Thale cress | cytosol, nucleus, peroxisome | 75.78 | 73.21 |
| CDY59046 | Canola | cytosol, golgi, peroxisome | 74.61 | 72.9 |
| CDX84253 | Canola | cytosol, nucleus, peroxisome | 73.83 | 71.59 |
| Bra005361.1-P | Field mustard | cytosol, nucleus, peroxisome | 73.44 | 71.21 |
| CDY31671 | Canola | cytosol, nucleus, peroxisome | 73.44 | 71.21 |
| KRH04258 | Soybean | cytosol | 71.88 | 70.5 |
| KRH57547 | Soybean | cytosol | 71.09 | 69.73 |
| EER97617 | Sorghum | cytosol | 62.89 | 59.85 |
| EER92219 | Sorghum | cytosol | 62.5 | 58.61 |
| HORVU2Hr1G084560.1 | Barley | extracellular, plasma membrane | 32.81 | 57.14 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.2 | MapMan:22.7.2.4 | EntrezGene:8069192 | UniProt:C5Z1V3 | ncoils:Coil |
| EnsemblPlants:EER90393 | ProteinID:EER90393 | ProteinID:EER90393.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005886 |
| GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006888 | GO:GO:0006891 | GO:GO:0006896 | GO:GO:0008150 |
| GO:GO:0009504 | GO:GO:0009987 | GO:GO:0012507 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0031201 | GO:GO:0031902 | GO:GO:0042147 | GO:GO:0048280 | InterPro:IPR000727 | PFAM:PF03908 |
| PFscan:PS50192 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF27 | SMART:SM00397 | EnsemblPlantsGene:SORBI_3010G265900 | SUPFAM:SSF58038 |
| unigene:Sbi.2677 | InterPro:Sec20 | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0001A8986F | RefSeq:XP_002439026.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:60136399..60140204
Molecular Weight (calculated)
28760.7 Da
IEP (calculated)
6.690
GRAVY (calculated)
-0.471
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLASVNEEL AEIDGQIGDI LRALQNGFQK LEKIKDANRR SRQLEELTDK MRDCKRLIKD FERVSKDEAG HTDPATAKML HDRKQSMIKE LNSYVALKKQ
101: QASENKRIDL FDGPSVEDGF GEENVQLASN MTNQQLMDQG NQLMDETDQA IARSKQTVHE TINVGTETAA ALKAQTEQMS RVVNELDSIH FSIKKASQLV
201: KEIGRQVATD RCIMAMLFLI VAGVIAIIIV KIVNPHNKDI RDIPGLAPPV SRRLLR
101: QASENKRIDL FDGPSVEDGF GEENVQLASN MTNQQLMDQG NQLMDETDQA IARSKQTVHE TINVGTETAA ALKAQTEQMS RVVNELDSIH FSIKKASQLV
201: KEIGRQVATD RCIMAMLFLI VAGVIAIIIV KIVNPHNKDI RDIPGLAPPV SRRLLR
001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
Arabidopsis Description
NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.